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Ozgun Babur

Formats
  1. Journal Article (12)
Groups
  1. Epidemiology and Biostatistics (5)
  2. GSK Faculty (5)
  3. Human Oncology and Pathogenesis Program (5)
  4. Center for Molecular Imaging and Biotechnology (CMIB) (4)
  5. Computational Oncology Service (4)
  6. Biostatistics Service (2)

More Groups

People
  1. Emek Demir (12)
  2. Chris Sander (11)
  3. Bulent Aksoy (8)
  4. Nikolaus Schultz (4)
  5. Selcuk Sumer (4)
  6. Benjamin Gross (2)

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Years
  1. 2016 (1)
  2. 2015 (3)
  3. 2014 (3)
  4. 2013 (1)
  5. 2011 (1)
  6. 2010 (3)
Publications
  1. Bioinformatics (4)
  2. Nucleic Acids Research (2)
  3. BMC Genomics (1)
  4. Genome Biology (1)
  5. Nature Biotechnology (1)
  6. PLoS Computational Biology (1)

More Publications

Publishers
  1. Oxford University Press (6)
  2. Biomed Central Ltd (2)
  3. Public Library of Science (2)
  4. Nature Publishing Group (1)
  5. eLife Sciences Publications Ltd. (1)

Results (12)

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  • PaxtoolsR: Pathway analysis in R using Pathway Commons
    Journal Article

    Luna, A.; Babur, Ö; Aksoy, B. A.; Demir, E.; Sander, C.
    Bioinformatics (2016)

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  • Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells
    Journal Article

    Korkut, A.; Wang, W.; Demir, E.; Aksoy, B. A.; Jing, X.; Molinelli, E. J.; Babur, Ö; Bemis, D. L.; Sumer, S. O.; Solit, D. B.; more...
    eLife (2015)

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  • Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations
    Journal Article

    Babur, Ö; Gönen, M.; Aksoy, B. A.; Schultz, N.; Ciriello, G.; Sander, C.; Demir, E.
    Genome Biology (2015)

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  • SBGNViz: A tool for visualization and complexity management of SBGN process description maps
    Journal Article

    Sari, M.; Bahceci, I.; Dogrusoz, U.; Sumer, S. O.; Aksoy, B. A.; Babur, O.; Demir, E.
    PLoS ONE (2015)

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  • Integrating biological pathways and genomic profiles with ChiBE 2
    Journal Article

    Babur, O.; Dogrusoz, U.; Çakır, M.; Aksoy, B. A.; Schultz, N.; Sander, C.; Demir, E.
    BMC Genomics (2014)

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  • Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles
    Journal Article

    Aksoy, B. A.; Demir, E.; Babur, Ö; Wang, W.; Jing, X.; Schultz, N.; Sander, C.
    Bioinformatics (2014)

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  • Pattern search in biopax models
    Journal Article

    Babur, Ö; Aksoy, B. A.; Rodchenkov, I.; Sümer, S. O.; Sander, C.; Demir, E.
    Bioinformatics (2014)

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  • Using Biological Pathway Data with Paxtools
    Journal Article

    Demir, E.; Babur, O.; Rodchenkov, I.; Aksoy, B. A.; Fukuda, K. I.; Gross, B.; Sümer, O. S.; Bader, G. D.; Sander, C.
    PLoS Computational Biology (2013)

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  • Pathway Commons, a web resource for biological pathway data
    Journal Article

    Cerami, E. G.; Gross, B. E.; Demir, E.; Rodchenkov, I.; Babur, O.; Anwar, N.; Schultz, N.; Bader, G. D.; Sander, C.
    Nucleic Acids Research (2011)

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  • ChiBE: Interactive visualization and manipulation of BioPAX pathway models
    Journal Article

    Babur, O.; Dogrusoz, U.; Demir, E.; Sander, C.
    Bioinformatics (2010)

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