PaxtoolsR: Pathway analysis in R using Pathway Commons Journal Article


Authors: Luna, A.; Babur, Ö; Aksoy, B. A.; Demir, E.; Sander, C.
Article Title: PaxtoolsR: Pathway analysis in R using Pathway Commons
Abstract: Purpose: PaxtoolsR package enables access to pathway data represented in the BioPAX format and made available through the Pathway Commons webservice for users of the R language to aid in advanced pathway analyses. Features include the extraction, merging and validation of pathway data represented in the BioPAX format. This package also provides novel pathway datasets and advanced querying features for R users through the Pathway Commons webservice allowing users to query, extract and retrieve data and integrate these data with local BioPAX datasets. © 2015 The Author.
Journal Title: Bioinformatics
Volume: 32
Issue: 8
ISSN: 1367-4803
Publisher: Oxford University Press  
Date Published: 2016-04-15
Start Page: 1262
End Page: 1264
Language: English
DOI: 10.1093/bioinformatics/btv733
PROVIDER: scopus
PMCID: PMC4824129
PUBMED: 26685306
DOI/URL:
Notes: Article -- Export Date: 2 June 2016 -- Source: Scopus
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MSK Authors
  1. Ozgun Babur
    12 Babur
  2. Chris Sander
    204 Sander
  3. Emek Demir
    27 Demir
  4. Bulent Arman Aksoy
    35 Aksoy
  5. Augustin Luna
    9 Luna