BioPAX support in CellDesigner Journal Article


Authors: Mi, H.; Muruganujan, A.; Demir, E.; Matsuoka, Y.; Funahashi, A.; Kitano, H.; Thomas, P. D.
Article Title: BioPAX support in CellDesigner
Abstract: Motivation: BioPAX is a standard language for representing and exchanging models of biological processes at the molecular and cellular levels. It is widely used by different pathway databases and genomics data analysis software. Currently, the primary source of BioPAX data is direct exports from the curated pathway databases. It is still uncommon for wet-lab biologists to share and exchange pathway knowledge using BioPAX. Instead, pathways are usually represented as informal diagrams in the literature. In order to encourage formal representation of pathways, we describe a software package that allows users to create pathway diagrams using CellDesigner, a user-friendly graphical pathway-editing tool and save the pathway data in BioPAX Level 3 format. © The Author 2011. Published by Oxford University Press. All rights reserved.
Journal Title: Bioinformatics
Volume: 27
Issue: 24
ISSN: 1367-4803
Publisher: Oxford University Press  
Date Published: 2011-12-15
Start Page: 3437
End Page: 3438
Language: English
DOI: 10.1093/bioinformatics/btr586
PROVIDER: scopus
PMCID: PMC3232372
PUBMED: 22021903
DOI/URL:
Notes: --- - "Export Date: 3 January 2012" - "Art. No.: btr586" - "CODEN: BOINF" - "Source: Scopus"
Altmetric
Citation Impact
MSK Authors
  1. Emek Demir
    27 Demir