Genetic association analysis of ATP binding cassette protein family reveals a novel association of ABCB1 genetic variants with epilepsy risk, but not with drug-resistance Journal Article


Authors: Balan, S.; Bharathan, S. P.; Vellichiramal, N. N.; Sathyan, S.; Joseph, V.; Radhakrishnan, K.; Banerjee, M.
Article Title: Genetic association analysis of ATP binding cassette protein family reveals a novel association of ABCB1 genetic variants with epilepsy risk, but not with drug-resistance
Abstract: Epilepsy constitutes a heterogeneous group of disorders that is characterized by recurrent unprovoked seizures due to widely different etiologies. Multidrug resistance remains a major issue in clinical epileptology, where one third of patients with epilepsy continue to have seizures. Role of efflux transporters in multidrug resistant epilepsy has been attributed to drug-resistant epilepsy although, with discrepant observation in genetic studies. These discrepancies could be attributed to variety of factors such as variable definition of the anti-epileptic drug (AED)-resistance, variable epilepsy phenotypes and ethnicities among the studies. In the present study we inquired the role of multidrug transporters ABCB1 and ABCG2 variants in determining AED-resistance and susceptibility to epilepsy in three well-characterized cohorts comprising of mesial temporal lobe epilepsy with hippocampal sclerosis (MTLE-HS) (prototype for AED-resistant epilepsy); juvenile myoclonic epilepsy (JME) (prototype for AED-responsive epilepsy); and healthy non-epileptic controls, in 738 subjects of Malayalam speaking south Indian ancestry. ABCB1 and ABCG2 variants were not found to be associated with drug resistance when AED-resistant and AED-responsive cohorts were compared. However, a significant association was observed between ABCB1 (C3435T) rs1045642 and risk of having epilepsy (MTLE-HS and JME pooled cohort; genotypic p-value = 0.0002; allelic p-value = 0.004). This association was seen persistent with MTLE-HS (genotypic p-value = 0.0008; allelic p-value = 0.004) and also with JME (genotypic p-value = 0.01; allelic p-value = 0.05) cohort individually. In-silico functional prediction indicated that ABCB1 rs1045642 has a deleterious impact on protein coding function and in splicing regulation. We conclude that the ABCB1 and ABCG2 variants do not confer to AED-resistance in the study population. However, ABCB1 rs1045642 increases vulnerability to epilepsy with greater tendency for MTLE-HS in south Indian ancestry from Kerala. © 2014 Balan et al.
Keywords: adolescent; adult; child; controlled study; school child; major clinical study; pathogenesis; drug efficacy; allele; gene; cohort analysis; genetic association; genetic variability; genotype; gene frequency; gene function; prediction; haplotype; etiracetam; oxcarbazepine; phenobarbital; topiramate; genetic susceptibility; abc transporter; pharmacogenetics; genetic risk; ethnic difference; phenytoin; rna splicing; valproic acid; genetic heterogeneity; genetic polymorphism; carbamazepine; lamotrigine; indian; gene linkage disequilibrium; clobazam; hippocampal sclerosis; mesial temporal lobe epilepsy; myoclonus epilepsy; human; male; female; article; abcb1 gene; abcg2 gene
Journal Title: PLoS ONE
Volume: 9
Issue: 2
ISSN: 1932-6203
Publisher: Public Library of Science  
Date Published: 2014-02-01
Start Page: e89253
Language: English
DOI: 10.1371/journal.pone.0089253
PROVIDER: scopus
PMCID: PMC3931716
PUBMED: 24586633
DOI/URL:
Notes: Export Date: 1 May 2014 -- CODEN: POLNC -- Source: Scopus
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  1. Vijai Joseph
    211 Joseph