A genome-wide association study of contralateral breast cancer in the Women’s Environmental Cancer and Radiation Epidemiology Study Journal Article


Authors: Sun, X.; Reiner, A. S.; Tran, A. P.; Watt, G. P.; Oh, J. H.; Mellemkjær, L.; Lynch, C. F.; Knight, J. A.; John, E. M.; Malone, K. E.; Liang, X.; Woods, M.; Derkach, A.; Concannon, P.; Bernstein, J. L.; Shu, X.
Article Title: A genome-wide association study of contralateral breast cancer in the Women’s Environmental Cancer and Radiation Epidemiology Study
Abstract: Background: Contralateral breast cancer (CBC) is the most common second primary cancer diagnosed in breast cancer survivors, yet the understanding of the genetic susceptibility of CBC, particularly with respect to common variants, remains incomplete. This study aimed to investigate the genetic basis of CBC to better understand this malignancy. Findings: We performed a genome-wide association analysis in the Women’s Environmental Cancer and Radiation Epidemiology (WECARE) Study of women with first breast cancer diagnosed at age < 55 years including 1161 with CBC who served as cases and 1668 with unilateral breast cancer (UBC) who served as controls. We observed two loci (rs59657211, 9q32, SLC31A2/FAM225A and rs3815096, 6p22.1, TRIM31) with suggestive genome-wide significant associations (P < 1 × 10–6). We also found an increased risk of CBC associated with a breast cancer-specific polygenic risk score (PRS) comprised of 239 known breast cancer susceptibility single nucleotide polymorphisms (SNPs) (rate ratio per 1-SD change: 1.25; 95% confidence interval 1.14–1.36, P < 0.0001). The protective effect of chemotherapy on CBC risk was statistically significant only among patients with an elevated PRS (Pheterogeneity = 0.04). The AUC that included the PRS and known breast cancer risk factors was significantly elevated. Conclusions: The present GWAS identified two previously unreported loci with suggestive genome-wide significance. We also confirm that an elevated risk of CBC is associated with a comprehensive breast cancer susceptibility PRS that is independent of known breast cancer risk factors. These findings advance our understanding of genetic risk factors involved in CBC etiology. © 2024, The Author(s).
Keywords: chemotherapy; genome-wide association study; contralateral breast cancer; genetic factors; polygenic risk score
Journal Title: Breast Cancer Research
Volume: 26
ISSN: 1465-5411
Publisher: Biomed Central Ltd  
Date Published: 2024-01-23
Start Page: 16
Language: English
DOI: 10.1186/s13058-024-01765-1
PROVIDER: scopus
PMCID: PMC10807183
PUBMED: 38263039
DOI/URL:
Notes: The MSK Cancer Center Support Grant (P30 CA008748) is acknowledged in the PDF -- Corresponding author is MSK author: Xiang Shu -- Source: Scopus
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MSK Authors
  1. Anne S Reiner
    248 Reiner
  2. Jonine L Bernstein
    142 Bernstein
  3. Jung Hun Oh
    187 Oh
  4. Xiaolin Liang
    62 Liang
  5. Meghan   Woods
    30 Woods
  6. Gordon Patrick Watt
    16 Watt
  7. Andriy Derkach
    148 Derkach
  8. Xiang Shu
    21 Shu
  9. Xiaohui Sun
    6 Sun
  10. Anh Phong Tran
    4 Tran