Detection of Blastomyces dermatitidis and Histoplasma capsulatum from culture isolates and clinical specimens by use of real-time PCR Journal Article


Authors: Babady, N. E.; Buckwalter, S. P.; Hall, L.; Le Febre, K. M.; Binnicker, M. J.; Wengenack, N. L.
Article Title: Detection of Blastomyces dermatitidis and Histoplasma capsulatum from culture isolates and clinical specimens by use of real-time PCR
Abstract: Blastomyces dermatitidis and Histoplasma capsulatum are dimorphic fungi that often cause self-limited respiratory infections. However, they may also cause severe disseminated disease, depending on the level of the exposure to the organism and the host immune status. In addition, patients with infections caused by these fungi may have very similar clinical presentations. Although microbiologic culture is a standard method for detecting these pathogens, their recovery may require days to weeks, and the manipulation of cultures presents a significant safety hazard to laboratory personnel. Therefore, the goal of this study was to design a rapid, real-time PCR assay to detect and differentiate B. dermatitidis and H. capsulatum from culture isolates and directly from clinical specimens. Primers and fluorescence resonance energy transfer hybridization probes were designed to target the histidine kinase and glyceraldehyde-3- phosphate dehydrogenase genes of B. dermatitidis and H. capsulatum, respectively. The analytical sensitivity of the assay was determined to be 100 copies/μl for both fungi. From culture isolates, the assay demonstrated 100% specificity and 100% sensitivity for B. dermatitidis and 100% specificity and 94% sensitivity for H. capsulatum. Detection directly from 797 clinical specimens demonstrated specificities and sensitivities of 99% and 86% for B. dermatitidis and 100% and 73% for H. capsulatum compared with the results for culture. This real-time PCR assay provides a rapid method for the detection of B. dermatitidis and H. capsulatum from culture isolates and directly from clinical specimens. Copyright © 2011, American Society for Microbiology. All Rights Reserved.
Keywords: controlled study; human tissue; major clinical study; nonhuman; sensitivity and specificity; accuracy; bone marrow; protein kinases; fluorescence resonance energy transfer; real time polymerase chain reaction; dna primers; pleura fluid; molecular probe; fungi; body fluid; fungal gene; lung lavage; histoplasmosis; hybridization; molecular diagnostic techniques; blood culture; fungus culture; histoplasma capsulatum; blastomyces dermatitidis; fungal detection; fungus isolation; glyceraldehyde 3 phosphate dehydrogenase gene; histidine kinase gene; peritoneal fluid; sputum culture; trachea mucus; tracheobronchial toilet; blastomycosis; real-time polymerase chain reaction; histoplasma; blastomyces; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); oligonucleotide probes; ajellomyces capsulatus; ajellomyces dermatitidis
Journal Title: Journal of Clinical Microbiology
Volume: 49
Issue: 9
ISSN: 0095-1137
Publisher: American Society for Microbiology  
Date Published: 2011-09-01
Start Page: 3204
End Page: 3208
Language: English
DOI: 10.1128/jcm.00673-11
PROVIDER: scopus
PMCID: PMC3165572
PUBMED: 21752970
DOI/URL:
Notes: --- - "Export Date: 3 October 2011" - "CODEN: JCMID" - "Source: Scopus"
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  1. Ngolela Esther Babady
    171 Babady