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Vipin Thankam Sreedharan

Formats
  1. Journal Article (5)
  2. Meeting Abstract (1)
Groups
  1. Sloan Kettering Institute Postdocs (6)
  2. Cancer Biology and Genetics Program Faculty (2)
  3. GSK Faculty (2)
  4. MSK Grad Students (2)
  5. Sloan Kettering Institute Faculty (2)
  6. Alan and Sandra Gerry Metastasis and Tumor Ecosystems Center (1)

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People
  1. Gunnar Ratsch (6)
  2. Andre Kahles (3)
  3. Jan Philipp Drewe (3)
  4. Yi Zhong (2)
  5. Christian Widmer (1)
  6. Christina Leslie (1)

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Years
  1. 2017 (2)
  2. 2014 (2)
  3. 2013 (1)
  4. 2012 (1)
Publications
  1. Bioinformatics (3)
  2. BMC Bioinformatics (1)
  3. Nature Biotechnology (1)
  4. PLoS Genetics (1)
Publishers
  1. Oxford University Press (3)
  2. Biomed Central Ltd (1)
  3. Nature Publishing Group (1)
  4. Public Library of Science (1)

Results (6)

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  • Prediction of potent shRNAs with a sequential classification algorithm
    Journal Article

    Pelossof, R.; Fairchild, L.; Huang, C. H.; Widmer, C.; Sreedharan, V. T.; Sinha, N.; Lai, D. Y.; Guan, Y.; Premsrirut, P. K.; Tschaharganeh, D. F.; more...
    Nature Biotechnology (2017)

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  • RiboDiff: Detecting changes of mRNA translation efficiency from ribosome footprints
    Journal Article

    Zhong, Y.; Karaletsos, T.; Drewe, P.; Sreedharan, V. T.; Kuo, D.; Singh, K.; Wendel, H. G.; Rätsch, G.
    Bioinformatics (2017)

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  • Oqtans: The RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
    Journal Article

    Sreedharan, V. T.; Schultheiss, S. J.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.
    Bioinformatics (2014)

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  • Oqtans: a multifunctional workbench for RNA-seq data analysis
    Meeting Abstract

    Sreedharan, V. T.; Schultheiss, S. J.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Ratsch, G.
    BMC Bioinformatics (2014)

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  • MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
    Journal Article

    Behr, J.; Kahles, A.; Zhong, Y.; Sreedharan, V. T.; Drewe, P.; Ratsch, G.
    Bioinformatics (2013)

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  • Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA
    Journal Article

    Kulemzina, I.; Schumacher, M. R.; Verma, V.; Reiter, J.; Metzler, J.; Failla, A. V.; Lanz, C.; Sreedharan, V. T.; Ratsch, G.; Ivanov, D.
    PLoS Genetics (2012)

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