Radiogenomics of clear cell renal cell carcinoma: Preliminary findings of The Cancer Genome Atlas–Renal Cell Carcinoma (TCGA–RCC) Imaging Research Group Journal Article


Authors: Shinagare, A. B.; Vikram, R.; Jaffe, C.; Akin, O.; Kirby, J.; Huang, E.; Freymann, J.; Sainani, N. I.; Sadow, C. A.; Bathala, T. K.; Rubin, D. L.; Oto, A.; Heller, M. T.; Surabhi, V. R.; Katabathina, V.; Silverman, S. G.
Article Title: Radiogenomics of clear cell renal cell carcinoma: Preliminary findings of The Cancer Genome Atlas–Renal Cell Carcinoma (TCGA–RCC) Imaging Research Group
Abstract: Purpose: To investigate associations between imaging features and mutational status of clear cell renal cell carcinoma (ccRCC). Materials and methods: This multi-institutional, multi-reader study included 103 patients (77 men; median age 59 years, range 34–79) with ccRCC examined with CT in 81 patients, MRI in 19, and both CT and MRI in three; images were downloaded from The Cancer Imaging Archive, an NCI-funded project for genome-mapping and analyses. Imaging features [size (mm), margin (well-defined or ill-defined), composition (solid or cystic), necrosis (for solid tumors: 0%, 1%–33%, 34%–66% or >66%), growth pattern (endophytic, <50% exophytic, or ≥50% exophytic), and calcification (present, absent, or indeterminate)] were reviewed independently by three readers blinded to mutational data. The association of imaging features with mutational status (VHL, BAP1, PBRM1, SETD2, KDM5C, and MUC4) was assessed. Results: Median tumor size was 49 mm (range 14–162 mm), 73 (71%) tumors had well-defined margins, 98 (95%) tumors were solid, 95 (92%) showed presence of necrosis, 46 (45%) had ≥50% exophytic component, and 18 (19.8%) had calcification. VHL (n = 52) and PBRM1 (n = 24) were the most common mutations. BAP1 mutation was associated with ill-defined margin and presence of calcification (p = 0.02 and 0.002, respectively, Pearson’s χ2 test); MUC4 mutation was associated with an exophytic growth pattern (p = 0.002, Mann–Whitney U test). Conclusions: BAP1 mutation was associated with ill-defined tumor margins and presence of calcification; MUC4 mutation was associated with exophytic growth. Given the known prognostic implications of BAP1 and MUC4 mutations, these results support using radiogenomics to aid in prognostication and management. © 2015, Springer Science+Business Media New York.
Keywords: adult; aged; middle aged; unclassified drug; gene mutation; major clinical study; solid tumor; cancer patient; nuclear magnetic resonance imaging; disease association; computer assisted tomography; tumor volume; protein; kidney carcinoma; kidney calcification; genomics; tumor growth; ct; von hippel lindau protein; mri; clear cell renal cell carcinoma; mucin 4; tumor necrosis; radiological parameters; tumor calcinosis; brca1 associated ring domain protein 1; mutational status; bap1 protein; human; male; female; priority journal; article; radiogenomics; k specific demethylase 5c protein; set domain containing 2 protein; radiogenomic
Journal Title: Abdominal Imaging
Volume: 40
Issue: 6
ISSN: 0942-8925
Publisher: Springer  
Date Published: 2015-08-01
Start Page: 1684
End Page: 1692
Language: English
DOI: 10.1007/s00261-015-0386-z
PROVIDER: scopus
PMCID: PMC4534327
PUBMED: 25753955
DOI/URL:
Notes: Export Date: 2 September 2015 -- Source: Scopus
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  1. Oguz Akin
    265 Akin