Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila Journal Article

   

Authors:	Mohammed, J.; Bortolamiol-Becet, D.; Flynt, A. S.; Gronau, I.; Siepel, A.; Lai, E. C.
Article Title:	Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila
Abstract:	The propensity of animal miRNAs to regulate targets bearing modest complementarity, most notably via pairing with miRNA positions ∼2-8 (the "seed"), is believed to drive major aspects of miRNA evolution. First, minimal targeting requirements have allowed most conserved miRNAs to acquire large target cohorts, thus imposing strong selection on miRNAs to maintain their seed sequences. Second, the modest pairing needed for repression suggests that evolutionarily nascent miRNAs may generally induce net detrimental, rather than beneficial, regulatory effects. Hence, levels and activities of newly emerged miRNAs are expected to be limited to preserve the status quo of gene expression. In this study, we unexpectedly show that Drosophila testes specifically express a substantial miRNA population that contravenes these tenets. We find that multiple genomic clusters of testis-restricted miRNAs harbor recently evolved miRNAs, whose experimentally verified orthologs exhibit divergent sequences, even within seed regions. Moreover, this class of miRNAs exhibits higher expression and greater phenotypic capacities in transgenic misexpression assays than do non-testis-restricted miRNAs of similar evolutionary age. These observations suggest that these testis-restricted miRNAs may be evolving adaptively, and several methods of evolutionary analysis provide strong support for this notion. Consistent with this, proof-of-principle tests show that orthologous miRNAs with divergent seeds can distinguish target sensors in a species-cognate manner. Finally, we observe that testis-restricted miRNA clusters exhibit extraordinary dynamics of miRNA gene flux in other Drosophila species. Altogether, our findings reveal a surprising tissue-directed influence of miRNA evolution, involving a distinct mode of miRNA function connected to adaptive gene regulation in the testis. © 2014 Mohammed et al.
Keywords:	drosophila; positive selection; microrna clusters; testis specific; tissue specific
Journal Title:	RNA
Volume:	20
Issue:	8
ISSN:	1355-8382
Publisher:	Cold Spring Harbor Laboratory Press
Date Published:	2014-08-01
Start Page:	1195
End Page:	1209
Language:	English
DOI:	10.1261/rna.044644.114
PROVIDER:	scopus
PMCID:	PMC4105746
PUBMED:	24942624
DOI/URL:	http://www.scopus.com/inward/record.url?eid=2-s2.0-84904514659&partnerID=40&md5=91732576bc14dba0c2e9345160a6c3f8
Notes:	Export Date: 1 August 2014 -- CODEN: RNARF -- Source: Scopus

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