Kitlo hematopoietic stem cells exhibit distinct lymphoid-primed chromatin landscapes that enhance thymic reconstitution Journal Article


Authors: Elias, H. K.; Mitra, S.; da Silva, M. B.; Rajagopalan, A.; Gipson, B.; Lee, N.; Kousa, A. I.; Ali, M. A. E.; Grassmann, S.; Raghuraman, R.; Zhang, X. C.; DeWolf, S.; Smith, M.; Andrlova, H.; Argyropoulos, K. V.; Sharma, R.; Fei, T.; Sun, J. C.; Dunbar, C. E.; Park, C. Y.; Leslie, C. S.; Bhandoola, A.; Kharas, M. G.; van den Brink, M. R. M.
Article Title: Kitlo hematopoietic stem cells exhibit distinct lymphoid-primed chromatin landscapes that enhance thymic reconstitution
Abstract: Hematopoietic stem cells (HSC) with multilineage potential are critical for T cell reconstitution after allogeneic hematopoietic cell transplantation (allo-HCT). The Kitlo HSC subset is enriched for multipotential precursors, but their T cell potential remains poorly characterized. Using a preclinical allo-HCT mouse model, we demonstrate that Kitlo HSCs provide superior thymic recovery and T cell reconstitution, resulting in improved immune responses to post-transplant infection. Kitlo HSCs with augmented bone marrow (BM) lymphopoiesis mitigate age-associated thymic alterations and enhance T cell recovery in middle-aged mice. Mechanistically, chromatin profiling reveals Kitlo HSCs exhibiting higher activity of lymphoid-specifying transcription factors, such as, ZBTB1. Zbtb1 deletion diminishes HSC engraftment and T cell potential; by contrast, reinstating Zbtb1 in megakaryocytic-biased Kithi HSCs rescues hematopoietic engraftment and T cell potential in vitro and in vivo. Furthermore, age-associated decline in Kitlo HSCs is associated with diminished T lymphopoietic potential in aged BM precursors; meanwhile, Kitlo HSCs in aged mice maintain enhanced lymphoid potential, but their per-cell capacity is diminished. Lastly, we observe an analogous human BM KITlo HSC subset with enhanced lymphoid potential. Our results thus uncover an age-related epigenetic regulation of lymphoid-competent Kitlo HSCs for T cell reconstitution. © The Author(s) 2025.
Keywords: transplantation, homologous; genetics; nonhuman; t lymphocyte; t-lymphocytes; mouse; animal; cytology; metabolism; animals; mice; stem cell factor receptor; proto-oncogene proteins c-kit; bone marrow; animal experiment; protein; hematopoietic stem cell transplantation; mice, inbred c57bl; c57bl mouse; immunology; engraftment; immune response; thymus; thymus gland; chromatin; bone; hematopoietic stem cells; rodent; hematopoietic stem cell; lymphopoiesis; allotransplantation; experimental study; cell; lymphoid cell; infectious disease; article
Journal Title: Nature Communications
Volume: 16
ISSN: 2041-1723
Publisher: Nature Publishing Group  
Date Published: 2025-07-04
Start Page: 6170
Language: English
DOI: 10.1038/s41467-025-61125-1
PUBMED: 40615375
PROVIDER: scopus
PMCID: PMC12227609
DOI/URL:
Notes: The MSK Cancer Center Support Grant (P30 CA008748) is acknowledged in the PubMed record and PDF. Corresponding MSK authors are Harold K. Elias and Michael G. Kharas -- Source: Scopus
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MSK Authors
  1. Meredith Y Smith
    9 Smith
  2. Joseph C Sun
    136 Sun
  3. Christina Leslie
    192 Leslie
  4. Michael Kharas
    100 Kharas
  5. Harold Kunal Elias
    18 Elias
  6. Roshan Sharma
    25 Sharma
  7. Anastasia Kousa
    14 Kousa
  8. Susan E Dewolf
    51 Dewolf
  9. Nicole Elizabeth Lee
    11 Lee
  10. Teng Fei
    47 Fei
  11. Brianna Gipson
    14 Gipson
  12. Sneha Mitra
    6 Mitra
  13. Xiaoqun Catherine Zhang
    1 Zhang