Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1 Journal Article


Authors: Vabret, N.; Najburg, V.; Solovyov, A.; Gopal, R.; McClain, C.; Šulc, P.; Balan, S.; Rahou, Y.; Beauclair, G.; Chazal, M.; Varet, H.; Legendre, R.; Sismeiro, O.; Sanchez David, R. Y.; Chauveau, L.; Jouvenet, N.; Markowitz, M.; van der Werf, S.; Schwartz, O.; Tangy, F.; Bhardwaj, N.; Greenbaum, B. D.; Komarova, A. V.
Article Title: Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1
Abstract: Pattern recognition receptors (PRRs) protect against microbial invasion by detecting specific molecular patterns found in pathogens and initiating an immune response. Although microbial-derived PRR ligands have been extensively characterized, the contribution and relevance of endogenous ligands to PRR activation remains overlooked. Here, we characterize the landscape of endogenous ligands that engage RIG-I-like receptors (RLRs) upon infection by different RNA viruses. In each infection, several RNAs transcribed by RNA polymerase III (Pol3) specifically engaged RLRs, particularly the family of Y RNAs. Sensing of Y RNAs was dependent on their mimicking of viral secondary structure and their 5′-triphosphate extremity. Further, we found that HIV-1 triggered a VPR-dependent downregulation of RNA triphosphatase DUSP11 in vitro and in vivo, inducing a transcriptome-wide change of cellular RNA 5′-triphosphorylation that licenses Y RNA immunogenicity. Overall, our work uncovers the contribution of endogenous RNAs to antiviral immunity and demonstrates the importance of this pathway in HIV-1 infection. © 2022 The Authors
Keywords: transcriptomics; immunology; biological sciences
Journal Title: iScience
Volume: 25
Issue: 7
ISSN: 2589-0042
Publisher: Cell Press  
Date Published: 2022-07-15
Start Page: 104599
Language: English
DOI: 10.1016/j.isci.2022.104599
PROVIDER: scopus
PMCID: PMC9250025
PUBMED: 35789859
DOI/URL:
Notes: Article -- Export Date: 1 August 2022 -- Source: Scopus
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