A single-molecule surface-based platform to detect the assembly and function of the human RNA polymerase II transcription machinery Journal Article


Authors: Park, S. R.; Hauver, J.; Zhang, Y.; Revyakin, A.; Coleman, R. A.; Tjian, R.; Chu, S.; Pertsinidis, A.
Article Title: A single-molecule surface-based platform to detect the assembly and function of the human RNA polymerase II transcription machinery
Abstract: Single-molecule detection and manipulation is a powerful tool for unraveling dynamic biological processes. Unfortunately, success in such experiments is often challenged by tethering the biomolecule(s) of interest to a biocompatible surface. Here, we describe a robust surface passivation method by dense polymer brush grafting, based on optimized polyethylene glycol (PEG) deposition conditions, exactly at the lower critical point of an aqueous biphasic PEG-salt system. The increased biocompatibility achieved, compared with PEG deposition in sub-optimal conditions away from the critical point, allowed us to successfully detect the assembly and function of a large macromolecular machine, a fluorescent-labeled multi-subunit, human RNA Polymerase II Transcription Pre-Initiation Complex, on single, promoter-containing, surface-immobilized DNA molecules. This platform will enable probing the complex biochemistry and dynamics of large, multi-subunit macromolecular assemblies, such as during the initiation of human RNA Pol II transcription, at the single-molecule level. © 2020 Elsevier Ltd Park et al. develop optimized surface preparation procedures for single-molecule experiments. The increased biocompatibility achieved enables visualizing the assembly and function of a large, multi-component molecular machinery, the human RNA Polymerase II Transcription Pre-Initiation Complex, on a natural promoter, at the single-molecule level. © 2020 Elsevier Ltd
Keywords: transcription; rna polymerase; polyethylene glycol; peg; pre-initiation complex; general transcription factors; pol ii; polymer brushes; single-molecule assays; surface passivation
Journal Title: Structure
Volume: 28
Issue: 12
ISSN: 0969-2126
Publisher: Cell Press  
Date Published: 2020-12-01
Start Page: 1337
End Page: 1343.e4
Language: English
DOI: 10.1016/j.str.2020.07.009
PUBMED: 32763141
PROVIDER: scopus
PMCID: PMC7710921
DOI/URL:
Notes: Article -- Export Date: 4 January 2021 -- Source: Scopus
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  1. Jesse J. Hauver
    3 Hauver