Comparison of xMAP Salmonella serotyping assay with traditional serotyping and discordance resolution by whole genome sequencing Journal Article


Authors: Luo, Y.; Huang, C.; Ye, J.; Octavia, S.; Wang, H.; Dunbar, S. A.; Jin, D.; Tang, Y. W.; Lan, R.
Article Title: Comparison of xMAP Salmonella serotyping assay with traditional serotyping and discordance resolution by whole genome sequencing
Abstract: Salmonella spp. are a major cause of foodborne illness throughout the world. Traditional serotyping by antisera agglutination has been used as a standard identification method for many years but newer nucleic acid-based tests have become available that may provide advantages in workflow and test turnaround time. In this study, we evaluated the Luminex® xMAP® Salmonella Serotyping Assay (SSA), a multiplex nucleic acid test capable of identifying 85% of the most common Salmonella serotypes, in comparison to the traditional serum agglutination test (SAT) on 4 standard strains and 255 isolates from human (224), environmental, and food (31) samples. Of the total of 259 isolates, 256 could be typed by the SSA. Of these, 197 (77.0%) were fully typed and 59 (23.0%) were partially typed. By SAT, 246 of the 259 isolates (95%) were successfully typed. Sixty isolates had discrepant results between SAT and SSA and were resolved using whole genome sequencing (WGS). By SAT, 80.0% (48/60) of the isolates were consistent with WGS while by SSA 91.7% (55/60) were partially consistent with WGS. By serovar, all 30 serovars except one tested were fully or partially typable. The workflow comparison showed that SSA provided advantages over SAT with a hands-on time (HOT) of 3.5 min and total turnaround time (TAT) of 6 h, as compared to 1 h HOT and 2–6 days TAT for SAT. Overall, this study showed that molecular serotyping is promising as a rapid method for Salmonella serotyping with good accuracy for typing most common Salmonella serovars circulating in China. © Copyright © 2020 Luo, Huang, Ye, Octavia, Wang, Dunbar, Jin, Tang and Lan.
Keywords: evaluation; salmonella; molecular serotyping; wgs; xmap assay
Journal Title: Frontiers in Cellular and Infection Microbiology
Volume: 10
ISSN: 2235-2988
Publisher: Frontiers Media S.A.  
Date Published: 2020-09-07
Start Page: 452
Language: English
DOI: 10.3389/fcimb.2020.00452
PROVIDER: scopus
PMCID: PMC7504902
PUBMED: 33014887
DOI/URL:
Notes: Article -- Export Date: 1 October 2020 -- Source: Scopus
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  1. Yi-Wei Tang
    181 Tang