An improved synthesis of 2’-deoxy-9-deazaadenosine and an N-7 blocked derivative useful for the synthesis of modified oligonucleotides containing 2’-deoxy-9-deazaadenosine Journal Article


Authors: Ciszewski, L. A.; Lipka, P.; Ren, W. Y.; Watanabe, K. A.
Article Title: An improved synthesis of 2’-deoxy-9-deazaadenosine and an N-7 blocked derivative useful for the synthesis of modified oligonucleotides containing 2’-deoxy-9-deazaadenosine
Abstract: As an epimerization resistant synthon in the synthesis of oligonucleotides consisting of C-nucleoside analogues, hitherto unknown 5-benzyloxymethyl-3-(2-deoxy-β-D-erythro-pentofuranosyl)pyrrolo[3, 2-d]pyrimidine (7-benzyloxymethyl-2’-deoxy-9-deazaadenosine) was prepared in seven steps from the known 3-amino-2-cyano-4-(2, 3-O-isopropylidene-5-O-trityl-β-D-ribofuranosyl)-pyrrole (1). Treatment of 1 with benzyl chloromethyl ether in the presence of potassium t-butoxide and 18-crown-6 afforded the N-protected pyrrole 2, which was converted into the 9-deazapurine derivative 3 in high yield by heating in EtOH. 7-Benzyloxymethyl-9-deazaadenosine 4 was obtained from 3 by acid hydrolysis in 2.5% methanolic hydrogen chloride. After protection of the hydroxyl groups of 4 with Markievicz’s reagent, the product 5 was converted into the 2-O-phenoxythiocarbonyl derivative 6. Reduction of 6 with butyltin hydride in the presence of 2, 2’-azobis(2-methylpropionitrile), followed by desilylation with triethylammonium fluoride, afforded the desired 7-benzyloxymethyl-2’-deoxy-9-deazaadenosine (8) in high overall yield. The benzyloxymethyl group of 8 was removed by hydrogenolysis over palladium hydroxide (Degussa type) to give 2’-deoxy-9-deazaadenosine (9) in quantitative yield. The structure of 9 is discussed. © 1993, Taylor & Francis Group, LLC. All rights reserved.
Keywords: unclassified drug; chemical structure; oligonucleotide; proton nuclear magnetic resonance; nucleotide metabolism; adenosine derivative; article; c nucleoside; 9 deazadeoxyadenosine
Journal Title: Nucleosides & Nucleotides
Volume: 12
Issue: 5
ISSN: 0732-8311
Publisher: Taylor & Francis Inc.  
Date Published: 1993-07-01
Start Page: 487
End Page: 498
Language: English
DOI: 10.1080/07328319308021218
PROVIDER: scopus
DOI/URL:
Notes: Wu-Yun Ren's name is misspelled on the original publication -- Article -- Export Date: 1 March 2019 -- Source: Scopus
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  1. Kyoichi A Watanabe
    125 Watanabe