Unique transcriptional programs identify subtypes of AKI Journal Article


Authors: Xu, K.; Rosenstiel, P.; Paragas, N.; Hinze, C.; Gao, X. B.; Shen, T. H.; Werth, M.; Forster, C.; Deng, R.; Bruck, E.; Boles, R. W.; Tornato, A.; Gopal, T.; Jones, M.; Konig, J.; Stauber, J.; D'Agati, V.; Erdjument-Bromage, H.; Saggi, S.; Wagener, G.; Schmidt-Ott, K. M.; Tatonetti, N.; Tempst, P.; Oliver, J. A.; Guarnieri, P.; Barasch, J.
Article Title: Unique transcriptional programs identify subtypes of AKI
Abstract: Two metrics, a rise in serum creatinine concentration and a decrease in urine output, are considered tantamount to theinjuryof thekidney tubuleandtheepithelial cells thereof (AKI).Yetneither criterionemphasizes theetiology or the pathogenetic heterogeneity of acute decreases in kidney excretory function. In fact, whether decreased excretory function due to contraction of the extracellular fluid volume (vAKI) or due to intrinsic kidney injury (iAKI) actually share pathogenesis and should be aggregated in the same diagnostic group remains an open question. To examine this possibility, we created mouse models of iAKI and vAKI that induced a similar increase in serum creatinine concentration. Using lasermicrodissection to isolate specific domains of the kidney, followed by RNAsequencing,we found that thousands of genes responded specifically to iAKI or to vAKI, but very fewresponded to both stimuli. In fact, the activated gene sets comprised different, functionally unrelated signal transduction pathways and were expressed in different regions of the kidney. Moreover, we identified distinctive gene expression patterns in human urine as potentialbiomarkers of either iAKI or vAKI, but not both.Hence, iAKI and vAKI are biologically unrelated, suggesting that molecular analysis should clarify our current definitions of acute changes in kidney excretory function. © 2017 by the American Society of Nephrology.
Keywords: signal transduction; controlled study; genetics; nonhuman; mouse; animal; animals; mice; gene expression; classification; animal experiment; animal model; gene function; creatinine; creatinine blood level; mice, inbred c57bl; c57bl mouse; acute kidney failure; gene activation; kidney function; urinalysis; transcriptome; rna sequence; laser microdissection; urinary excretion; acute kidney injury; humans; human; female; priority journal; article
Journal Title: Journal of the American Society of Nephrology
Volume: 28
Issue: 6
ISSN: 1046-6673
Publisher: American Society of Nephrology  
Date Published: 2017-06-01
Start Page: 1729
End Page: 1740
Language: English
DOI: 10.1681/asn.2016090974
PUBMED: 28028135
PROVIDER: scopus
PMCID: PMC5461802
DOI/URL:
Notes: Article -- Export Date: 2 August 2017 -- Source: Scopus
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  1. Paul J Tempst
    324 Tempst