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General & Administration; NE Scientific Researcher

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1. ChromaFold predicts the 3D contact map from single-cell chromatin accessibility

   Journal Article

   Gao, V. R.; Yang, R.; Das, A.; Luo, R.; Luo, H.; McNally, D. R.; Karagiannidis, I.; Rivas, M. A.; Wang, Z. M.; Barisic, D.; more...
   Nature Communications (2024)

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2. Epiphany: Predicting Hi-C contact maps from 1D epigenomic signals

   Journal Article

   Yang, R.; Das, A.; Gao, V. R.; Karbalayghareh, A.; Noble, W. S.; Bilmes, J. A.; Leslie, C. S.
   Genome Biology (2023)

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3. Chromatin interaction-aware gene regulatory modeling with graph attention networks

   Journal Article

   Karbalayghareh, A.; Sahin, M.; Leslie, C. S.
   Genome Research (2022)

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