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Hongyu Shi

  1. "GSK Faculty"
Formats
  1. Journal Article (8)
  2. Meeting Abstract (3)
Groups
  1. Alumni (GSK) (11)
  2. Center for Molecular Imaging and Biotechnology (CMIB) (11)
  3. Epidemiology and Biostatistics (11)
  4. GSK Faculty (11)
  5. Gerstner Sloan Kettering Graduate School of Biomedical Sciences (11)
  6. MSK Grad Students (11)

More Groups

People
  1. Sohrab Shah (8)
  2. Andrew Mcpherson (7)
  3. Marc Williams (6)
  4. Nicholas Ceglia (6)
  5. Dmitriy Zamarin (5)
  6. Ignacio Vazquez Garcia (5)

More People

Years
  1. 2024 (3)
  2. 2022 (6)
  3. 2021 (1)
  4. 2020 (1)
Publications
  1. Nature Communications (3)
  2. Nature (2)
  3. Cancer Cell (1)
  4. Cancer Research (1)
  5. Clinical Cancer Research (1)
  6. Journal for ImmunoTherapy of Cancer (1)

More Publications

Publishers
  1. Nature Publishing Group (7)
  2. American Association for Cancer Research (2)
  3. Biomed Central Ltd (1)
  4. Cell Press (1)

Results (11)

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  • Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data
    Journal Article

    Weiner, A. C.; Williams, M. J.; Shi, H.; Vázquez-García, I.; Salehi, S.; Rusk, N.; Aparicio, S.; Shah, S. P.; McPherson, A.
    Nature Communications (2024)

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  • Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes
    Journal Article

    Kim, M.; Gorelick, A. N.; Vàzquez-García, I.; Williams, M. J.; Salehi, S.; Shi, H.; Weiner, A. C.; Ceglia, N.; Funnell, T.; Park, T.; more...
    Nature Genetics (2024)

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  • Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
    Journal Article

    Shi, H.; Williams, M. J.; Satas, G.; Weiner, A. C.; McPherson, A.; Shah, S. P.
    Nature Communications (2024)

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  • Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes
    Meeting Abstract

    Vázquez-García, I.; Uhlitz, F.; Ceglia, N.; Lim, J. L.; Wu, M.; Mohibullah, N.; Ruiz, A. E. B.; Boehm, K. M.; Bojilova, V.; Fong, C. J.; more...
    Cancer Research (2022)

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  • Targeted sequencing of 2,138 bone and soft tissue sarcomas reveals commonly altered pathways, subtype-independent genetic clusters, and potential therapeutic targets
    Meeting Abstract

    Nacev, B. A.; Sanchez-Vega, F.; Smith, S.; Antonescu, C.; Rosenbaum, E.; Shi, H.; Tang, C.; Socci, N.; Rana, S.; Gularte-Merida, R.; more...
    Clinical Cancer Research (2022)

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  • Single-cell genomic variation induced by mutational processes in cancer
    Journal Article

    Funnell, T.; O’Flanagan, C. H.; Williams, M. J.; McPherson, A.; McKinney, S.; Kabeer, F.; Lee, H.; Salehi, S.; Vázquez-García, I.; Shi, H.; more...
    Nature (2022)

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  • Ovarian cancer mutational processes drive site-specific immune evasion
    Journal Article

    Vázquez-García, I.; Uhlitz, F.; Ceglia, N.; Lim, J. L. P.; Wu, M.; Mohibullah, N.; Niyazov, J.; Ruiz, A. E. B.; Boehm, K. M.; Bojilova, V.; more...
    Nature (2022)

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  • Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
    Journal Article

    Nacev, B. A.; Sanchez-Vega, F.; Smith, S. A.; Antonescu, C. R.; Rosenbaum, E.; Shi, H.; Tang, C.; Socci, N. D.; Rana, S.; Zehir, A.; more...
    Nature Communications (2022)

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  • Improved prediction of immune checkpoint blockade efficacy across multiple cancer types
    Journal Article

    Chowell, D.; Yoo, S. K.; Valero, C.; Pastore, A.; Krishna, C.; Lee, M.; Hoen, D.; Shi, H.; Kelly, D. W.; Patel, N.; more...
    Nature Biotechnology (2022)

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  • Tim-4(+) cavity-resident macrophages impair anti-tumor CD8(+) T cell immunity
    Journal Article

    Chow, A.; Schad, S.; Green, M. D.; Hellmann, M. D.; Allaj, V.; Ceglia, N.; Zago, G.; Shah, N. S.; Sharma, S. K.; Mattar, M.; more...
    Cancer Cell (2021)

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