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Hongyu Shi

  1. "Computational Oncology Service"
Formats
  1. Journal Article (8)
  2. Meeting Abstract (3)
Groups
  1. Alumni (GSK) (11)
  2. Computational Oncology Service (11)
  3. Epidemiology and Biostatistics (11)
  4. Gerstner Sloan Kettering Graduate School of Biomedical Sciences (11)
  5. MSK Grad Students (11)
  6. Sloan Kettering Institute Postdocs (11)

More Groups

People
  1. Sohrab Shah (8)
  2. Andrew Mcpherson (7)
  3. Marc Williams (6)
  4. Nicholas Ceglia (6)
  5. Dmitriy Zamarin (5)
  6. Ignacio Vazquez Garcia (5)

More People

Years
  1. 2024 (3)
  2. 2022 (5)
  3. 2021 (2)
  4. 2020 (1)
Publications
  1. Nature Communications (3)
  2. Nature (2)
  3. Annals of Surgery (1)
  4. Cancer Cell (1)
  5. Cancer Research (1)
  6. Clinical Cancer Research (1)

More Publications

Publishers
  1. Nature Publishing Group (6)
  2. American Association for Cancer Research (2)
  3. Biomed Central Ltd (1)
  4. Cell Press (1)
  5. Lippincott Williams & Wilkins (1)

Results (11)

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  • Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data
    Journal Article

    Weiner, A. C.; Williams, M. J.; Shi, H.; Vázquez-García, I.; Salehi, S.; Rusk, N.; Aparicio, S.; Shah, S. P.; McPherson, A.
    Nature Communications (2024)

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  • Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes
    Journal Article

    Kim, M.; Gorelick, A. N.; Vàzquez-García, I.; Williams, M. J.; Salehi, S.; Shi, H.; Weiner, A. C.; Ceglia, N.; Funnell, T.; Park, T.; more...
    Nature Genetics (2024)

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  • Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
    Journal Article

    Shi, H.; Williams, M. J.; Satas, G.; Weiner, A. C.; McPherson, A.; Shah, S. P.
    Nature Communications (2024)

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  • Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes
    Meeting Abstract

    Vázquez-García, I.; Uhlitz, F.; Ceglia, N.; Lim, J. L.; Wu, M.; Mohibullah, N.; Ruiz, A. E. B.; Boehm, K. M.; Bojilova, V.; Fong, C. J.; more...
    Cancer Research (2022)

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  • Targeted sequencing of 2,138 bone and soft tissue sarcomas reveals commonly altered pathways, subtype-independent genetic clusters, and potential therapeutic targets
    Meeting Abstract

    Nacev, B. A.; Sanchez-Vega, F.; Smith, S.; Antonescu, C.; Rosenbaum, E.; Shi, H.; Tang, C.; Socci, N.; Rana, S.; Gularte-Merida, R.; more...
    Clinical Cancer Research (2022)

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  • Single-cell genomic variation induced by mutational processes in cancer
    Journal Article

    Funnell, T.; O’Flanagan, C. H.; Williams, M. J.; McPherson, A.; McKinney, S.; Kabeer, F.; Lee, H.; Salehi, S.; Vázquez-García, I.; Shi, H.; more...
    Nature (2022)

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  • Ovarian cancer mutational processes drive site-specific immune evasion
    Journal Article

    Vázquez-García, I.; Uhlitz, F.; Ceglia, N.; Lim, J. L. P.; Wu, M.; Mohibullah, N.; Niyazov, J.; Ruiz, A. E. B.; Boehm, K. M.; Bojilova, V.; more...
    Nature (2022)

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  • Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
    Journal Article

    Nacev, B. A.; Sanchez-Vega, F.; Smith, S. A.; Antonescu, C. R.; Rosenbaum, E.; Shi, H.; Tang, C.; Socci, N. D.; Rana, S.; Zehir, A.; more...
    Nature Communications (2022)

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  • A randomized phase II trial of adjuvant hepatic arterial infusion and systemic therapy with or without panitumumab after hepatic resection of KRAS wild-type colorectal cancer
    Journal Article

    Kemeny, N. E.; Chou, J. F.; Capanu, M.; Chatila, W. K.; Shi, H.; Sanchez-Vega, F.; Kingham, T. P.; Connell, L. C.; Jarnagin, W. R.; D'Angelica, M. I.
    Annals of Surgery (2021)

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  • Tim-4(+) cavity-resident macrophages impair anti-tumor CD8(+) T cell immunity
    Journal Article

    Chow, A.; Schad, S.; Green, M. D.; Hellmann, M. D.; Allaj, V.; Ceglia, N.; Zago, G.; Shah, N. S.; Sharma, S. K.; Mattar, M.; more...
    Cancer Cell (2021)

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