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Andre Kahles

Formats
  1. Journal Article (30)
  2. Meeting Abstract (1)
Groups
  1. Sloan Kettering Institute Postdocs (31)
  2. Center for Molecular Imaging and Biotechnology (CMIB) (14)
  3. Computational Oncology Service (14)
  4. Department of Pathology and Laboratory Medicine (14)
  5. Epidemiology and Biostatistics (14)
  6. GSK Faculty (14)

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People
  1. Gunnar Ratsch (30)
  2. Kjong Van Lehmann (18)
  3. Nikolaus Schultz (14)
  4. Chris Sander (13)
  5. Jianjiong Gao (13)
  6. Joshua Armenia (13)

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Years
  1. 2020 (14)
  2. 2019 (1)
  3. 2018 (2)
  4. 2016 (2)
  5. 2015 (3)
  6. 2014 (2)

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Publications
  1. Nature Communications (9)
  2. Bioinformatics (4)
  3. Nature (3)
  4. Plant Cell (3)
  5. Cell (2)
  6. Nature Genetics (2)

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Publishers
  1. Nature Publishing Group (17)
  2. Oxford University Press (5)
  3. Amer Soc Plant Biologists (3)
  4. Cell Press (3)
  5. Biomed Central Ltd (1)
  6. Springer Nature (1)

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Results (31)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • MMR: A tool for read multi-mapper resolution
    Journal Article

    Kahles, A.; Behr, J.; Rätsch, G.
    Bioinformatics (2015)

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  • DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
    Journal Article

    Dubin, M. J.; Zhang, P.; Meng, D.; Remigereau, M. S.; Osborne, E. J.; Casale, F. P.; Drewe, P.; Kahles, A.; Jean, G.; Vilhjálmsson, B.; more...
    eLife (2015)

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  • Oqtans: The RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
    Journal Article

    Sreedharan, V. T.; Schultheiss, S. J.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.
    Bioinformatics (2014)

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  • Oqtans: a multifunctional workbench for RNA-seq data analysis
    Meeting Abstract

    Sreedharan, V. T.; Schultheiss, S. J.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Ratsch, G.
    BMC Bioinformatics (2014)

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  • Assessment of transcript reconstruction methods for RNA-seq
    Journal Article

    Steijger, T.; Abril, J. F.; Engström, P. G.; Kokocinski, F.; Akerman, M.; Alioto, T.; Ambrosini, G.; Antonarakis, S. E.; Behr, J.; Bertone, P.; more...
    Nature Methods (2013)

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  • Systematic evaluation of spliced alignment programs for RNA-seq data
    Journal Article

    Engström, P. G.; Steijger, T.; Sipos, B.; Grant, G. R.; Kahles, A.; Rätsch, G.; Goldman, N.; Hubbard, T. J.; Harrow, J.; Guigó, R.; more...
    Nature Methods (2013)

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  • Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
    Journal Article

    Drechsel, G.; Kahles, A.; Kesarwani, A. K.; Stauffer, E.; Behr, J.; Drewe, P.; Rätsch, G.; Wachter, A.
    Plant Cell (2013)

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  • The Cancer Genome Atlas Pan-Cancer analysis project
    Journal Article

    The Cancer Genome Atlas Research Network; Weinstein, J. N.; Collisson, E. A.; Mills, G. B.; Mills Shaw, K. R.; Ozenberger, B. A.; Ellrott, K.; Shmulevich, I.; Sander, C.; Stuart, J. M.
    Nature Genetics (2013)

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  • MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
    Journal Article

    Behr, J.; Kahles, A.; Zhong, Y.; Sreedharan, V. T.; Drewe, P.; Ratsch, G.
    Bioinformatics (2013)

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  • Accurate detection of differential RNA processing
    Journal Article

    Drewe, P.; Stegle, O.; Hartmann, L.; Kahles, A.; Bohnert, R.; Wachter, A.; Borgwardt, K.; Ratsch, G.
    Nucleic Acids Research (2013)

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