Selection of single-stranded DNA molecular recognition elements against Exotoxin A using a novel Decoy-SELEX method and sensitive detection of Exotoxin A in human serum Journal Article


Authors: Hong, K. L.; Yancey, K.; Battistella, L.; Williams, R. M.; Hickey, K. M.; Bostick, C. D.; Gannett, P. M.; Sooter, L. J.
Article Title: Selection of single-stranded DNA molecular recognition elements against Exotoxin A using a novel Decoy-SELEX method and sensitive detection of Exotoxin A in human serum
Abstract: Exotoxin A is one of the virulence factors of Pseudomonas aeruginosa, a bacterium that can cause infections resulting in adverse health outcomes and increased burden to health care systems. Current methods of diagnosing P. aeruginosa infections are time consuming and can require significant preparation of patient samples. This study utilized a novel variation of the Systematic Evolution of Ligand by Exponential Enrichment, Decoy-SELEX, to identify an Exotoxin A specific single-stranded DNA (ssDNA) molecular recognition element (MRE). Its emphasis is on increasing stringency in directing binding toward free target of interest and at the same time decreasing binding toward negative targets. A ssDNA MRE with specificity and affinity was identified after fourteen rounds of Decoy-SELEX. Utilizing surface plasmon resonance measurements, the determined equilibrium dissociation constant (K d) of the MRE is between 4.2 ?M and 4.5 ?M, and is highly selective for Exotoxin A over negative targets. A ssDNA MRE modified sandwich enzyme-linked immunosorbent assay (ELISA) has been developed and achieved sensitive detection of Exotoxin A at nanomolar concentrations in human serum. This study has demonstrated the proof-of-principle of using a ssDNA MRE as a clinical diagnostic tool. © 2015 Ka Lok Hong et al.
Keywords: controlled study; unclassified drug; binding affinity; analytic method; enzyme linked immunosorbent assay; molecular recognition; single stranded dna; surface plasmon resonance; serum; dissociation constant; chemical binding; element; exotoxin; exotoxin a; human; article; molecular recognition element; specific single stranded dna; systematic evolution of ligand by exponential enrichment
Journal Title: Biomed Research International
Volume: 2015
ISSN: 2314-6133
Publisher: Hindawi Publishing Corporation  
Date Published: 2015-01-01
Start Page: 417641
Language: English
DOI: 10.1155/2015/417641
PROVIDER: scopus
PMCID: PMC4655287
PUBMED: 26636098
DOI/URL:
Notes: Article -- Art. No. 417641 -- Export Date: 7 January 2016 -- Source: Scopus
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