Structure-function analysis of the Yhc1 subunit of yeast U1 snRNP and genetic interactions of Yhc1 with Mud2, Nam8, Mud1, Tgs1, U1 snRNA, SmD3 and Prp28 Journal Article


Authors: Schwer, B.; Shuman, S.
Article Title: Structure-function analysis of the Yhc1 subunit of yeast U1 snRNP and genetic interactions of Yhc1 with Mud2, Nam8, Mud1, Tgs1, U1 snRNA, SmD3 and Prp28
Abstract: Yhc1 and U1C are homologous essential subunits of the yeast and human U1 snRNP, respectively, that are implicated in the establishment and stability of the complex of U1 bound to the pre-mRNA 50 splice site (50SS). Here, we conducted a mutational analysis of Yhc1, guided by the U1C NMR structure and low-resolution crystal structure of human U1 snRNP the N-terminal 170-amino acid segment of the 231-amino acid Yhc1 polypeptide sufficed for vegetative growth. Although changing the zinc-binding residue Cys6 to alanine was lethal, alanines at zinc-binding residues Cys9, His24 and His30 were not. Benign alanine substitutions at conserved surface residues elicited mutational synergies with other splicing components. YHC1-R21A was synthetically lethal in the absence of Mud2 and synthetically sick in the absence of Nam8, Mud1 and Tgs1 or in the presence of variant U1 snRNAs. YHC1 alleles K28A, Y12A, T14A, K22A and H15A displayed a progressively narrower range of synergies. R21A and K28A bypassed the essentiality of DEAD-box protein Prp28, suggesting that they affected U150SS complex stability. Yhc1 Arg21 fortifies the U150SS complex via contacts with SmD3 residues Glu37/Asp38, mutations of which synergized with mud2 and bypassed prp28. YHC1-(1-170) was synthetically lethal with mutations of all components interrogated, with the exception of Nam8. © 2014 The Author(s). Published by Oxford University Press.
Keywords: controlled study; unclassified drug; nonhuman; protein function; allele; gene; complex formation; amino acid substitution; structure activity relation; mutational analysis; dead box protein; amino terminal sequence; gene interaction; molecular interaction; protein structure; nuclear magnetic resonance; fungal protein; fungus growth; small nuclear rna; priority journal; article; prp28 protein; yhc1 protein; mud1 gene; mud2 gene; nam8 gene; prp28 gene; smd3 gene; yhc1 gene
Journal Title: Nucleic Acids Research
Volume: 42
Issue: 7
ISSN: 0305-1048
Publisher: Oxford University Press  
Date Published: 2014-04-01
Start Page: 4697
End Page: 4711
Language: English
DOI: 10.1093/nar/gku097
PROVIDER: scopus
PMCID: PMC3985668
PUBMED: 24497193
DOI/URL:
Notes: Nucleic Acids Res. -- Export Date: 2 June 2014 -- CODEN: NARHA -- Source: Scopus
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  1. Stewart H Shuman
    546 Shuman