Biomarkers in the era of personalized medicine - A multiplexed SNP assay using capillary electrophoresis for assessing drug metabolism capacity Journal Article
| Authors: | Rai, A. J.; Yee, J.; Fleisher, M. |
| Article Title: | Biomarkers in the era of personalized medicine - A multiplexed SNP assay using capillary electrophoresis for assessing drug metabolism capacity |
| Abstract: | Pharmacogenetics is the study of genetic differences in an individual that leads to variability in drug response. Single-nucleotide polymorphisms (SNPs) prove to be important determinants in evaluating and predicting a patient's response to certain medications and risk of adverse events. The Cytochrome P450 2D6 (CYP2D6) gene is particularly important in the metabolism of many clinically prescribed drugs. In this study, we designed a multiplexed panel to interrogate 8 clinically relevant SNPs of CYP2D6 (*2 at C2856G, *2 at G4181C, *3, *4, *5,*6, *7, and *8). We PCR-amplified a 4.7 kB segment of the CYP2D6 locus containing all the SNPs of interest using genomic DNA extracted from whole blood. Using single base extension and capillary electrophoresis separation, peaks corresponding to the SNPs resolve within a 2560 bp window. We subsequently analyzed 25 samples using this protocol and compared results to traditional DNA sequencing using an ABI 3730. All samples were 100% concordant between the two methods. This assay can be performed with <24 h turnaround time and minimal hands-on effort. This multiplex SNP panel can be used for interrogation of 8 SNPs within the 2D6 gene, with application to identifying poor metabolizers of 2d6. Patients harbouring SNPs in 2D6 could be triaged to alternative therapies in an effort to maximize therapeutic efficacy and reduce adverse drug reactions. © 2010 Informa UK Ltd. |
| Keywords: | single nucleotide polymorphism; genetics; polymorphism, single nucleotide; methodology; diagnostic accuracy; polymerase chain reaction; biological marker; gene targeting; gene amplification; gene expression; gene expression profiling; gene locus; genotype; feasibility study; instrumentation; blood sampling; feasibility studies; gene identification; capillary electrophoresis; electrophoresis, capillary; dna sequence; pharmacogenetics; genetic screening; oligonucleotide; dna extraction; genetic marker; genomic dna; genetic testing; genetic markers; pharmacokinetics; cytochrome p450; metabolic regulation; personalized medicine; cytochrome p450 2d6; individualized medicine; pharmacological biomarker; single base extension; single nucleotide polymorphisms (snps); extension gene; biomarkers, pharmacological; cytochrome p-450 cyp2d6 |
| Journal Title: | Scandinavian Journal of Clinical and Laboratory Investigation |
| Volume: | 70 |
| Issue: | Suppl. 242 |
| ISSN: | 0036-5513 |
| Publisher: | Informa Healthcare |
| Date Published: | 2010-01-01 |
| Start Page: | 15 |
| End Page: | 18 |
| Language: | English |
| DOI: | 10.3109/00365513.2010.493355 |
| PUBMED: | 20515270 |
| PROVIDER: | scopus |
| DOI/URL: | |
| Notes: | --- - "Cited By (since 1996): 1" - "Export Date: 20 April 2011" - "CODEN: SJCLA" - "Source: Scopus" |
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