Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation Journal Article


Authors: Arpaia, N.; Campbell, C.; Fan, X.; Dikiy, S.; Van Der Veeken, J.; Deroos, P.; Liu, H.; Cross, J. R.; Pfeffer, K.; Coffer, P. J.; Rudensky, A. Y.
Article Title: Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
Abstract: Intestinal microbes provide multicellular hosts with nutrients and confer resistance to infection. The delicate balance between pro- and anti-inflammatory mechanisms, essential for gut immune homeostasis, is affected by the composition of the commensal microbial community. Regulatory T cells (T reg cells) expressing transcription factor Foxp3 have a key role in limiting inflammatory responses in the intestine. Although specific members of the commensal microbial community have been found to potentiate the generation of anti-inflammatory T reg or pro-inflammatory T helper 17 (T H 17) cells, the molecular cues driving this process remain elusive. Considering the vital metabolic function afforded by commensal microorganisms, we reasoned that their metabolic by-products are sensed by cells of the immune system and affect the balance between pro- and anti-inflammatory cells. We tested this hypothesis by exploring the effect of microbial metabolites on the generation of anti-inflammatory T reg cells. We found that in mice a short-chain fatty acid (SCFA), butyrate, produced by commensal microorganisms during starch fermentation, facilitated extrathymic generation of T reg cells. A boost in T reg -cell numbers after provision of butyrate was due to potentiation of extrathymic differentiation of T reg cells, as the observed phenomenon was dependent on intronic enhancer CNS1 (conserved non-coding sequence 1), essential for extrathymic but dispensable for thymic T reg -cell differentiation. In addition to butyrate, de novo T reg -cell generation in the periphery was potentiated by propionate, another SCFA of microbial origin capable of histone deacetylase (HDAC) inhibition, but not acetate, which lacks this HDAC-inhibitory activity. Our results suggest that bacterial metabolites mediate communication between the commensal microbiota and the immune system, affecting the balance between pro- and anti-inflammatory mechanisms. © 2013 Macmillan Publishers Limited. All rights reserved.
Journal Title: Nature
Volume: 504
Issue: 7480
ISSN: 0028-0836
Publisher: Nature Publishing Group  
Date Published: 2013-12-19
Start Page: 451
End Page: 455
Language: English
DOI: 10.1038/nature12726
PROVIDER: scopus
PMCID: PMC3869884
PUBMED: 24226773
DOI/URL:
Notes: Export Date: 2 January 2014 -- CODEN: NATUA -- Source: Scopus
Altmetric
Citation Impact
BMJ Impact Analytics
MSK Authors
  1. Alexander Rudensky
    156 Rudensky
  2. Paul C Deroos
    2 Deroos
  3. Justin Robert Cross
    111 Cross
  4. Nicholas Arpaia
    8 Arpaia
  5. Stanislav Dikiy
    12 Dikiy
  6. Paul James Coffer
    2 Coffer
  7. Hui   Liu
    8 Liu
  8. Xiying   Fan
    11 Fan