Software support for SBGN maps: SBGN-ML and LibSBGN Journal Article


Authors: Van Iersel, M. P.; Villéger, A. C.; Czauderna, T.; Boyd, S. E.; Bergmann, F. T.; Luna, A.; Demir, E.; Sorokin, A.; Dogrusoz, U.; Matsuoka, Y.; Funahashi, A.; Aladjem, M. I.; Mi, H.; Moodie, S. L.; Kitano, H.; Le Novere, N.; Schreiber, F.
Article Title: Software support for SBGN maps: SBGN-ML and LibSBGN
Abstract: Motivation: LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner. © The Author(s) 2012. Published by Oxford University Press.
Journal Title: Bioinformatics
Volume: 28
Issue: 15
ISSN: 1367-4803
Publisher: Oxford University Press  
Date Published: 2012-08-01
Start Page: 2016
End Page: 2021
Language: English
DOI: 10.1093/bioinformatics/bts270
PROVIDER: scopus
PMCID: PMC3400951
PUBMED: 22581176
DOI/URL:
Notes: --- - "Export Date: 4 September 2012" - "Art. No.: bts270" - "CODEN: BOINF" - "Source: Scopus"
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  1. Emek Demir
    27 Demir