Deep learning based apparent diffusion coefficient map generation from multi-parametric MR images for patients with diffuse gliomas Journal Article


Authors: Eidex, Z.; Safari, M.; Wynne, J.; Qiu, R. L. J.; Wang, T.; Viar-Hernandez, D.; Shu, H. K.; Mao, H.; Yang, X.
Article Title: Deep learning based apparent diffusion coefficient map generation from multi-parametric MR images for patients with diffuse gliomas
Abstract: Purpose: Apparent diffusion coefficient (ADC) maps derived from diffusion weighted magnetic resonance imaging (DWI MRI) provides functional measurements about the water molecules in tissues. However, DWI is time consuming and very susceptible to image artifacts, leading to inaccurate ADC measurements. This study aims to develop a deep learning framework to synthesize ADC maps from multi-parametric MR images. Methods: We proposed the multiparametric residual vision transformer model (MPR-ViT) that leverages the long-range context of vision transformer (ViT) layers along with the precision of convolutional operators. Residual blocks throughout the network significantly increasing the representational power of the model. The MPR-ViT model was applied to T1w and T2-fluid attenuated inversion recovery images of 501 glioma cases from a publicly available dataset including preprocessed ADC maps. Selected patients were divided into training (N = 400), validation (N = 50), and test (N = 51) sets, respectively. Using the preprocessed ADC maps as ground truth, model performance was evaluated and compared against the Vision Convolutional Transformer (VCT) and residual vision transformer (ResViT) models with the peak signal-to-noise ratio (PSNR), structural similarity index measure (SSIM), and mean squared error (MSE). Results: The results are as follows using T1w + T2-FLAIR MRI as inputs: MPR-ViT—PSNR: 31.0 ± 2.1, MSE: 0.009 ± 0.0005, SSIM: 0.950 ± 0.015. In addition, ablation studies showed the relative impact on performance of each input sequence. Both qualitative and quantitative results indicate that the proposed MR-ViT model performs favorably against the ground truth data. Conclusion: We show that high-quality ADC maps can be synthesized from structural MRI using a MPR-ViT model. Our predicted images show better conformality to the ground truth volume than ResViT and VCT predictions. These high-quality synthetic ADC maps would be particularly useful for disease diagnosis and intervention, especially when ADC maps have artifacts or are unavailable. © 2024 American Association of Physicists in Medicine.
Keywords: controlled study; major clinical study; validation process; nuclear magnetic resonance imaging; brain tumor; glioma; brain neoplasms; magnetic resonance imaging; signal noise ratio; diagnostic imaging; quantitative analysis; brain mapping; image processing, computer-assisted; image processing; diffusion weighted imaging; diffusion magnetic resonance imaging; nuclear magnetic resonance; arthroplasty; mri; image reconstruction; qualitative analysis; ultrasonic imaging; diffusion tensor imaging; procedures; apparent diffusion coefficient; dwi; paramagnetic resonance; mr-images; structural similarity; multiparametric magnetic resonance imaging; humans; human; article; flow visualization; mean square error; deep learning; mean squared error; peak signal to noise ratio; fluid-attenuated inversion recovery imaging; diffusion in liquids; similarity indices; intramodal mri synthesis; apparent diffusion coefficient maps; transformer modeling; photomapping; diffusion in solids; photointerpretation
Journal Title: Medical Physics
Volume: 52
Issue: 2
ISSN: 0094-2405
Publisher: American Association of Physicists in Medicine  
Date Published: 2025-02-01
Start Page: 847
End Page: 855
Language: English
DOI: 10.1002/mp.17509
PUBMED: 39514841
PROVIDER: scopus
PMCID: PMC11788019
DOI/URL:
Notes: Source: Scopus
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  1. Tonghe Wang
    51 Wang