Understanding the genetic complexity of puberty timing across the allele frequency spectrum Journal Article


Authors: Kentistou, K. A.; Kaisinger, L. R.; Vaudel, M.; Stankovic, S.; Mendes de Oliveira, E.; Messina, A.; Walters, R. G.; Liu, X.; Busch, A. S.; Helgason, H.; Thompson, D. J.; Santoni, F.; Petricek, K. M.; Zouaghi, Y.; Huang-Doran, I.; Gudbjartsson, D. F.; Bratland, E.; Lin, K.; Gardner, E. J.; Zhao, Y.; Jia, R. Y.; Terao, C.; Riggan, M. J.; Bolla, M. K.; Yazdanpanah, M.; Yazdanpanah, N.; Bradfield, J. P.; Broer, L.; Campbell, A.; Chasman, D. I.; Cousminer, D. L.; Franceschini, N.; Franke, L. H.; Girotto, G.; He, C.; Järvelin, M. R.; Joshi, P. K.; Kamatani, Y.; Karlsson, R.; Luan, J.; Lunetta, K. L.; Mägi, R.; Mangino, M.; Medland, S. E.; Meisinger, C.; Noordam, R.; Nutile, T.; Concas, M. P.; Polašek, O.; Porcu, E.; Ring, S. M.; Sala, C.; Smith, A. V.; Tanaka, T.; van der Most, P. J.; Vitart, V.; Wang, C. A.; Willemsen, G.; Zygmunt, M.; Ahearn, T. U.; Andrulis, I. L.; Anton-Culver, H.; Antoniou, A. C.; Auer, P. L.; Barnes, C. L. K.; Beckmann, M. W.; Berrington de Gonzalez, A.; Bogdanova, N. V.; Bojesen, S. E.; Brenner, H.; Buring, J. E.; Canzian, F.; Chang-Claude, J.; Couch, F. J.; Cox, A.; Crisponi, L.; Czene, K.; Daly, M. B.; Demerath, E. W.; Dennis, J.; Devilee, P.; De Vivo, I.; Dörk, T.; Dunning, A. M.; Dwek, M.; Eriksson, J. G.; Fasching, P. A.; Fernandez-Rhodes, L.; Ferreli, L.; Fletcher, O.; Gago-Dominguez, M.; García-Closas, M.; García-Sáenz, J. A.; González-Neira, A.; Grallert, H.; Guénel, P.; Haiman, C. A.; Hall, P.; Hamann, U.; Hakonarson, H.; Hart, R. J.; Hickey, M.; Hooning, M. J.; Hoppe, R.; Hopper, J. L.; Hottenga, J. J.; Hu, F. B.; Huebner, H.; Hunter, D. J.; ABCTB Investigator; Jernström, H.; John, E. M.; Karasik, D.; Khusnutdinova, E. K.; Kristensen, V. N.; Lacey, J. V.; Lambrechts, D.; Launer, L. J.; Lind, P. A.; Lindblom, A.; Magnusson, P. K. E.; Mannermaa, A.; McCarthy, M. I.; Meitinger, T.; Menni, C.; Michailidou, K.; Millwood, I. Y.; Milne, R. L.; Montgomery, G. W.; Nevanlinna, H.; Nolte, I. M.; Nyholt, D. R.; Obi, N.; O’Brien, K. M.; Offit, K.; Oldehinkel, A. J.; Ostrowski, S. R.; Palotie, A.; Pedersen, O. B.; Peters, A.; Pianigiani, G.; Plaseska-Karanfilska, D.; Pouta, A.; Pozarickij, A.; Radice, P.; Rennert, G.; Rosendaal, F. R.; Ruggiero, D.; Saloustros, E.; Sandler, D. P.; Schipf, S.; Schmidt, C. O.; Schmidt, M. K.; Small, K.; Spedicati, B.; Stampfer, M.; Stone, J.; Tamimi, R. M.; Teras, L. R.; Tikkanen, E.; Turman, C.; Vachon, C. M.; Wang, Q.; Winqvist, R.; Wolk, A.; Zemel, B. S.; Zheng, W.; van Dijk, K. W.; Alizadeh, B. Z.; Bandinelli, S.; Boerwinkle, E.; Boomsma, D. I.; Ciullo, M.; Chenevix-Trench, G.; Cucca, F.; Esko, T.; Gieger, C.; Grant, S. F. A.; Gudnason, V.; Hayward, C.; Kolčić, I.; Kraft, P.; Lawlor, D. A.; Martin, N. G.; Nøhr, E. A.; Pedersen, N. L.; Pennell, C. E.; Ridker, P. M.; Robino, A.; Snieder, H.; Sovio, U.; Spector, T. D.; Stöckl, D.; Sudlow, C.; Timpson, N. J.; The Lifelines Cohort Study; Toniolo, D.; Uitterlinden, A.; Ulivi, S.; Völzke, H.; Wareham, N. J.; Widen, E.; Wilson, J. F.; The Lifelines Cohort Study; The Danish Blood Donor Study; The Ovarian Cancer Association Consortium; The Breast Cancer Association Consortium; The Biobank Japan Project; The China Kadoorie Biobank Collaborative Group; Pharoah, P. D. P.; Li, L.; Easton, D. F.; Njølstad, P. R.; Sulem, P.; Murabito, J. M.; Murray, A.; Manousaki, D.; Juul, A.; Erikstrup, C.; Stefansson, K.; Horikoshi, M.; Chen, Z.; Farooqi, I. S.; Pitteloud, N.; Johansson, S.; Day, F. R.; Perry, J. R. B.; Ong, K. K.
Article Title: Understanding the genetic complexity of puberty timing across the allele frequency spectrum
Abstract: Pubertal timing varies considerably and is associated with later health outcomes. We performed multi-ancestry genetic analyses on ~800,000 women, identifying 1,080 signals for age at menarche. Collectively, these explained 11% of trait variance in an independent sample. Women at the top and bottom 1% of polygenic risk exhibited ~11 and ~14-fold higher risks of delayed and precocious puberty, respectively. We identified several genes harboring rare loss-of-function variants in ~200,000 women, including variants in ZNF483, which abolished the impact of polygenic risk. Variant-to-gene mapping approaches and mouse gonadotropin-releasing hormone neuron RNA sequencing implicated 665 genes, including an uncharacterized G-protein-coupled receptor, GPR83, which amplified the signaling of MC3R, a key nutritional sensor. Shared signals with menopause timing at genes involved in DNA damage response suggest that the ovarian reserve might signal centrally to trigger puberty. We also highlight body size-dependent and independent mechanisms that potentially link reproductive timing to later life disease. © The Author(s) 2024. corrected publication 2024.
Keywords: adolescent; child; single nucleotide polymorphism; genetics; polymorphism, single nucleotide; mouse; animal; animals; mice; gene frequency; genome-wide association study; delayed puberty; precocious puberty; puberty; menarche; receptors, g-protein-coupled; g protein coupled receptor; multifactorial inheritance; puberty, precocious; humans; human; female; puberty, delayed
Journal Title: Nature Genetics
Volume: 56
Issue: 7
ISSN: 1061-4036
Publisher: Nature Publishing Group  
Date Published: 2024-07-01
Start Page: 1397
End Page: 1411
Language: English
DOI: 10.1038/s41588-024-01798-4
PUBMED: 38951643
PROVIDER: scopus
PMCID: PMC11250262
DOI/URL:
Notes: Erratum published at DOI: 10.1038/s41588-024-01857-w -- Source: Scopus
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  1. Kenneth Offit
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