DNA mutational and copy number variation profiling of primary craniofacial osteosarcomas by next-generation sequencing Journal Article


Authors: Zhu, G. G.; Lu, C.; Petrovic, I.; Nafa, K.; Chen, W.; Syed, A.; Rana, S.; Klein, M. J.; Huang, S.; Wang, L.; Tap, W. D.; Ghossein, R. A.; Shah, J.; Hameed, M. R.
Article Title: DNA mutational and copy number variation profiling of primary craniofacial osteosarcomas by next-generation sequencing
Abstract: Background: Craniofacial osteosarcomas (CFOS) are uncommon malignant neoplasms of the head and neck with different clinical presentation, biological behavior and prognosis from conventional osteosarcomas of long bones. Very limited genetic data have been published on CFOS. Methods: In the current study, we performed comprehensive genomic studies in 15 cases of high-grade CFOS by SNP array and targeted next generation sequencing. Result: Our study shows high-grade CFOS demonstrate highly complex and heterogenous genomic alterations and harbor frequently mutated tumor suppressor genes TP53, CDKN2A/B, and PTEN, similar to conventional osteosarcomas. Potentially actionable gene amplifications involving CCNE1, AKT2, MET, NTRK1, PDGFRA, KDR, KIT, MAP3K14, FGFR1, and AURKA were seen in 43% of cases. GNAS hotspot activating mutations were also identified in a subset of CFOS cases, with one case representing malignant transformation from fibrous dysplasia, suggesting a role for GNAS mutation in the development of CFOS. Conclusion: High-grade CFOS demonstrate highly complex and heterogenous genomic alterations, with amplification involving receptor tyrosine kinase genes, and frequent mutations involving tumor suppressor genes. © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2024.
Keywords: osteosarcoma; adolescent; adult; child; aged; bone neoplasms; middle aged; bone tumor; young adult; genetics; mutation; pathology; genomics; dna mutational analysis; skull tumor; skull neoplasms; dna copy number variations; copy number variation; high throughput sequencing; high-throughput nucleotide sequencing; next-generation sequencing; humans; human; male; female; craniofacial osteosarcoma
Journal Title: Head and Neck Pathology
Volume: 18
ISSN: 1936-055X
Publisher: Humana Press Inc  
Date Published: 2024-06-17
Start Page: 48
Language: English
DOI: 10.1007/s12105-024-01634-5
PUBMED: 38884816
PROVIDER: scopus
PMCID: PMC11183031
DOI/URL:
Notes: Article -- MSK author Sichuan Hwang's last name is misspelled on the original publication -- MSK Cancer Center Support Grant (P30 CA008748) acknowledged in PubMed and PDF -- MSK corresponding author is Meera Hameed -- Source: Scopus
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MSK Authors
  1. Meera Hameed
    281 Hameed
  2. Ronald A Ghossein
    483 Ghossein
  3. Khedoudja Nafa
    243 Nafa
  4. Sinchun Hwang
    97 Hwang
  5. Jatin P Shah
    721 Shah
  6. William Douglas Tap
    374 Tap
  7. Aijazuddin Syed
    52 Syed
  8. Chuanyong Lu
    9 Lu
  9. Guo Zhu
    9 Zhu
  10. Satshil Rana
    37 Rana
  11. Lu Wang
    8 Wang