Acyl-CoA dehydrogenase substrate promiscuity: Challenges and opportunities for development of substrate reduction therapy in disorders of valine and isoleucine metabolism Journal Article


Authors: Houten, S. M.; Dodatko, T.; Dwyer, W.; Violante, S.; Chen, H.; Stauffer, B.; DeVita, R. J.; Vaz, F. M.; Cross, J. R.; Yu, C.; Leandro, J.
Article Title: Acyl-CoA dehydrogenase substrate promiscuity: Challenges and opportunities for development of substrate reduction therapy in disorders of valine and isoleucine metabolism
Abstract: Toxicity of accumulating substrates is a significant problem in several disorders of valine and isoleucine degradation notably short-chain enoyl-CoA hydratase (ECHS1 or crotonase) deficiency, 3-hydroxyisobutyryl-CoA hydrolase (HIBCH) deficiency, propionic acidemia (PA), and methylmalonic aciduria (MMA). Isobutyryl-CoA dehydrogenase (ACAD8) and short/branched-chain acyl-CoA dehydrogenase (SBCAD, ACADSB) function in the valine and isoleucine degradation pathways, respectively. Deficiencies of these acyl-CoA dehydrogenase (ACAD) enzymes are considered biochemical abnormalities with limited or no clinical consequences. We investigated whether substrate reduction therapy through inhibition of ACAD8 and SBCAD can limit the accumulation of toxic metabolic intermediates in disorders of valine and isoleucine metabolism. Using analysis of acylcarnitine isomers, we show that 2-methylenecyclopropaneacetic acid (MCPA) inhibited SBCAD, isovaleryl-CoA dehydrogenase, short-chain acyl-CoA dehydrogenase and medium-chain acyl-CoA dehydrogenase, but not ACAD8. MCPA treatment of wild-type and PA HEK-293 cells caused a pronounced decrease in C3-carnitine. Furthermore, deletion of ACADSB in HEK-293 cells led to an equally strong decrease in C3-carnitine when compared to wild-type cells. Deletion of ECHS1 in HEK-293 cells caused a defect in lipoylation of the E2 component of the pyruvate dehydrogenase complex, which was not rescued by ACAD8 deletion. MCPA was able to rescue lipoylation in ECHS1 KO cells, but only in cells with prior ACAD8 deletion. SBCAD was not the sole ACAD responsible for this compensation, which indicates substantial promiscuity of ACADs in HEK-293 cells for the isobutyryl-CoA substrate. Substrate promiscuity appeared less prominent for 2-methylbutyryl-CoA at least in HEK-293 cells. We suggest that pharmacological inhibition of SBCAD to treat PA should be investigated further. © 2023 SSIEM.
Keywords: controlled study; unclassified drug; human cell; gene deletion; genetics; protein function; metabolism; wild type; isoleucine; oxidoreductase; acetic acid; valine; carnitine; catabolism; pyruvate dehydrogenase complex; lipoylation; hek293 cells; isomer; branched chain amino acid; amino acid metabolism; medium chain acyl coenzyme a dehydrogenase; acyl-coa dehydrogenase; humans; human; article; hek293 cell line; genome editing; gene editing; disorders of amino acid and protein metabolism; acyl coenzyme a dehydrogenase; acylcarnitine; branched-chain amino acid; substrate reduction; 2-methyl-4-chlorophenoxyacetic acid; propionic acidemia; 2 methylbutyryl coa; 2 methylenecyclopropaneacetic acid; butyryl coenzyme a dehydrogenase; enoyl coenzyme a hydratase; isobutyryl coa dehydrogenase; isovaleryl coenzyme a dehydrogenase; 2 (4 chloro 2 methylphenoxy)acetic acid; substrate reduction therapy; hek293s cell line
Journal Title: Journal of Inherited Metabolic Disease
Volume: 46
Issue: 5
ISSN: 0141-8955
Publisher: Wiley Blackwell  
Date Published: 2023-09-01
Start Page: 931
End Page: 942
Language: English
DOI: 10.1002/jimd.12642
PUBMED: 37309295
PROVIDER: scopus
PMCID: PMC10526699
DOI/URL:
Notes: Article -- Source: Scopus
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  1. Justin Robert Cross
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