PAIP 2020: Microsatellite instability prediction in colorectal cancer Journal Article


Authors: Kim, K.; Lee, K.; Cho, S.; Kang, D. U.; Park, S.; Kang, Y.; Kim, H.; Choe, G.; Moon, K. C.; Lee, K. S.; Park, J. H.; Hong, C.; Nateghi, R.; Pourakpour, F.; Wang, X.; Yang, S.; Jahromi, S. A. F.; Khani, A.; Kim, H. R.; Choi, D. H.; Han, C. H.; Kwak, J. T.; Zhang, F.; Han, B.; Ho, D. J.; Kang, G. H.; Chun, S. Y.; Jeong, W. K.; Park, P.; Choi, J.
Article Title: PAIP 2020: Microsatellite instability prediction in colorectal cancer
Abstract: Microsatellite instability (MSI) refers to alterations in the length of simple repetitive genomic sequences. MSI status serves as a prognostic and predictive factor in colorectal cancer. The MSI-high status is a good prognostic factor in stage II/III cancer, and predicts a lack of benefit to adjuvant fluorouracil chemotherapy in stage II cancer but a good response to immunotherapy in stage IV cancer. Therefore, determining MSI status in patients with colorectal cancer is important for identifying the appropriate treatment protocol. In the Pathology Artificial Intelligence Platform (PAIP) 2020 challenge, artificial intelligence researchers were invited to predict MSI status based on colorectal cancer slide images. Participants were required to perform two tasks. The primary task was to classify a given slide image as belonging to either the MSI-high or the microsatellite-stable group. The second task was tumor area segmentation to avoid ties with the main task. A total of 210 of the 495 participants enrolled in the challenge downloaded the images, and 23 teams submitted their final results. Seven teams from the top 10 participants agreed to disclose their algorithms, most of which were convolutional neural network-based deep learning models, such as EfficientNet and UNet. The top-ranked system achieved the highest F1 score (0.9231). This paper summarizes the various methods used in the PAIP 2020 challenge. This paper supports the effectiveness of digital pathology for identifying the relationship between colorectal cancer and the MSI characteristics. © 2023
Keywords: fluorouracil; chemotherapy; pathology; colon cancer; microsatellite instability; prognostic factors; segmentation; diseases; dna sequences; msi; predictive factors; digital pathology; classification (of information); neural networks; genomic sequence; deep learning; digital pathologies; simple++; primary task
Journal Title: Medical Image Analysis
Volume: 89
ISSN: 1361-8415
Publisher: Elsevier Science, Inc.  
Date Published: 2023-10-01
Start Page: 102886
Language: English
DOI: 10.1016/j.media.2023.102886
PROVIDER: scopus
PUBMED: 37494811
DOI/URL:
Notes: Short survey -- Source: Scopus
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  1. David Joon Ho
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