Deep reinforcement learning with automated label extraction from clinical reports accurately classifies 3D MRI brain volumes Journal Article


Authors: Stember, J. N.; Shalu, H.
Article Title: Deep reinforcement learning with automated label extraction from clinical reports accurately classifies 3D MRI brain volumes
Abstract: Image classification is probably the most fundamental task in radiology artificial intelligence. To reduce the burden of acquiring and labeling data sets, we employed a two-pronged strategy. We automatically extracted labels from radiology reports in Part 1. In Part 2, we used the labels to train a data-efficient reinforcement learning (RL) classifier. We applied the approach to a small set of patient images and radiology reports from our institution. For Part 1, we trained sentence-BERT (SBERT) on 90 radiology reports. In Part 2, we used the labels from the trained SBERT to train an RL-based classifier. We trained the classifier on a training set of 40 images. We tested on a separate collection of 24 images. For comparison, we also trained and tested a supervised deep learning (SDL) classification network on the same set of training and testing images using the same labels. Part 1: The trained SBERT model improved from 82 to 100 % accuracy. Part 2: Using Part 1’s computed labels, SDL quickly overfitted the small training set. Whereas SDL showed the worst possible testing set accuracy of 50%, RL achieved 100 % testing set accuracy, with a p-value of 4.9 × 10 - 4. We have shown the proof-of-principle application of automated label extraction from radiological reports. Additionally, we have built on prior work applying RL to classification using these labels, extending from 2D slices to entire 3D image volumes. RL has again demonstrated a remarkable ability to train effectively, in a generalized manner, and based on small training sets. © 2022, The Author(s) under exclusive licence to Society for Imaging Informatics in Medicine.
Keywords: adult; controlled study; neuroimaging; nuclear magnetic resonance imaging; magnetic resonance imaging; radiation; automation; radiology; brain; artificial intelligence; imaging, three-dimensional; learning; extraction; brain size; classifier; procedures; classification (of information); learning systems; brain volume; three-dimensional imaging; radiology reports; humans; human; article; reinforcement (psychology); deep learning; image classification; deep reinforcement learning; reinforcement learning; reinforcement learnings; training sets; 3d mri brain volumes; automated label extraction; 3d mri brain volume; label extraction; small training; testing sets
Journal Title: Journal of Digital Imaging
Volume: 35
Issue: 5
ISSN: 0897-1889
Publisher: Springer  
Date Published: 2022-10-01
Start Page: 1143
End Page: 1152
Language: English
DOI: 10.1007/s10278-022-00644-5
PUBMED: 35562633
PROVIDER: scopus
PMCID: PMC9582186
DOI/URL:
Notes: Article -- Export Date: 1 November 2022 -- Source: Scopus
Altmetric
Citation Impact
BMJ Impact Analytics
MSK Authors
  1. Joseph Nathaniel Stember
    19 Stember