Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert microenvironment and is sensitized by immunogenic viruses Journal Article


Authors: Yan, J.; Chen, Y.; Patel, A. J.; Warda, S.; Lee, C. J.; Nixon, B. G.; Wong, E. W. P.; Miranda-Román, M. A.; Yang, N.; Wang, Y.; Pachai, M. R.; Sher, J.; Giff, E.; Tang, F.; Khurana, E.; Singer, S.; Liu, Y.; Galbo, P. M. Jr; Maag, J. L. V.; Koche, R. P.; Zheng, D.; Antonescu, C. R.; Deng, L.; Li, M. O.; Chen, Y.; Chi, P.
Article Title: Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert microenvironment and is sensitized by immunogenic viruses
Abstract: (Figure presented) Immune checkpoint blockade (ICB) has demonstrated clinical success in “inflamed” tumors with substantial T cell infiltrates, but tumors with an immune-desert tumor microenvironment (TME) fail to benefit. The tumor cell–intrinsic molecular mechanisms of the immune-desert phenotype remain poorly understood. Here, we demonstrated that inactivation of the polycomb-repressive complex 2 (PRC2) core components embryonic ectoderm development (EED) or suppressor of zeste 12 homolog (SUZ12), a prevalent genetic event in malignant peripheral nerve sheath tumors (MPNSTs) and sporadically in other cancers, drove a context-dependent immune-desert TME. PRC2 inactivation reprogramed the chromatin landscape that led to a cell-autonomous shift from primed baseline signaling-dependent cellular responses (e.g., IFN-γ signaling) to PRC2-regulated developmental and cellular differentiation transcriptional programs. Further, PRC2 inactivation led to diminished tumor immune infiltrates through reduced chemokine production and impaired antigen presentation and T cell priming, resulting in primary resistance to ICB. Intratumoral delivery of inactivated modified vaccinia virus Ankara (MVA) enhanced tumor immune infiltrates and sensitized PRC2-loss tumors to ICB. Our results identify molecular mechanisms of PRC2 inactivation–mediated, context-dependent epigenetic reprogramming that underline the immune-desert phenotype in cancer. Our studies also point to intratumoral delivery of immunogenic viruses as an initial therapeutic strategy to modulate the immune-desert TME and capitalize on the clinical benefit of ICB. © 2022, Yan et al.
Keywords: genetics; neoplasm; neoplasms; chromatin; virus; tumor microenvironment; viruses; polycomb repressive complex 2; humans; human
Journal Title: Journal of Clinical Investigation
Volume: 132
Issue: 17
ISSN: 0021-9738
Publisher: American Society for Clinical Investigation  
Date Published: 2022-09-01
Start Page: e153437
Language: English
DOI: 10.1172/jci153437
PUBMED: 35852856
PROVIDER: scopus
PMCID: PMC9433107
DOI/URL:
Notes: Article -- Export Date: 3 October 2022 -- Source: Scopus
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MSK Authors
  1. Yu Chen
    133 Chen
  2. Cristina R Antonescu
    895 Antonescu
  3. Liang Deng
    82 Deng
  4. Ping Chi
    173 Chi
  5. Samuel Singer
    337 Singer
  6. Wai Pung Elissa Wong
    21 Wong
  7. Richard Patrick Koche
    174 Koche
  8. Yuedan   Chen
    7 Chen
  9. Jessica   Sher
    13 Sher
  10. Briana Glyn Nixon
    24 Nixon
  11. Amish J Patel
    6 Patel
  12. Ning Yang
    25 Yang
  13. Yi Wang
    16 Wang
  14. Jesper Lars Viktor Maag
    14 Maaaag
  15. Cindy J Lee
    18 Lee
  16. Mohini R. Pachai
    8 Pachai
  17. Sarah Warda
    8 Warda
  18. Juan Yan
    7 Yan
  19. Emily Giff
    4 Giff