Implications of selection bias due to delayed study entry in clinical genomic studies Journal Article


Authors: Brown, S.; Lavery, J. A.; Shen, R.; Martin, A. S.; Kehl, K. L.; Sweeney, S. M.; Lepisto, E. M.; Rizvi, H.; McCarthy, C. G.; Schultz, N.; Warner, J. L.; Park, B. H.; Bedard, P. L.; Riely, G. J.; Schrag, D.; Panageas, K. S.; for the AACR Project GENIE Consortium
Article Title: Implications of selection bias due to delayed study entry in clinical genomic studies
Abstract: This Special Communication illustrates the consequences of not adjusting for left truncation and describes an approach to correct for length bias. Importance: Real-world data sets that combine clinical and genomic data may be subject to left truncation (when potential study participants are not included because they have already passed the milestone of interest at the time of study recruitment). The lapse between diagnosis and molecular testing can present analytic challenges and threaten the validity and interpretation of survival analyses. Observations: Effects of ignoring left truncation when estimating overall survival are illustrated using data from the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange Biopharma Collaborative (GENIE BPC), and a straightforward risk-set adjustment approach is described. Ignoring left truncation results in overestimation of overall survival: unadjusted median survival estimates from diagnosis among patients with stage IV non–small cell lung cancer or stage IV colorectal cancer were overestimated by more than 1 year. Conclusions and Relevance: Clinicogenomic data are a valuable resource for evaluation of real-world cancer outcomes and should be analyzed using appropriate methods to maximize their potential. Analysts must become adept at application of appropriate statistical methods to ensure valid, meaningful, and generalizable research findings.
Keywords: survival; genomics; selection bias; research, medical; research subjects; oncologic care
Journal Title: JAMA Oncology
Volume: 8
Issue: 2
ISSN: 2374-2437
Publisher: American Medical Association  
Date Published: 2022-02-01
Start Page: 287
End Page: 291
Language: English
DOI: 10.1001/jamaoncol.2021.5153
PROVIDER: EBSCOhost
PROVIDER: cinahl
PUBMED: 34734967
PMCID: PMC9190030
DOI/URL:
Notes: Accession Number: 155309607 -- Entry Date: 20220222 -- Revision Date: 20220222 -- Publication Type: Article; review; tables/charts -- Journal Subset: Peer Reviewed; USA. -- Source: Cinahl
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MSK Authors
  1. Ronglai Shen
    204 Shen
  2. Deborah Schrag
    229 Schrag
  3. Gregory J Riely
    599 Riely
  4. Katherine S Panageas
    512 Panageas
  5. Nikolaus D Schultz
    486 Schultz
  6. Hira Abbas Rizvi
    122 Rizvi
  7. Jessica Ann Lavery
    79 Lavery
  8. Axel Stephen Martin
    19 Martin
  9. Samantha Brown
    56 Brown