Structure and function of the ABCD1 Variant Database: 20 years, 940 pathogenic variants, and 3400 cases of adrenoleukodystrophy Journal Article


Authors: Mallack, E. J.; Gao, K.; Engelen, M.; Kemp, S.
Article Title: Structure and function of the ABCD1 Variant Database: 20 years, 940 pathogenic variants, and 3400 cases of adrenoleukodystrophy
Abstract: The progressive neurometabolic disorder X-linked adrenoleukodystrophy (ALD) is caused by pathogenic variants in the ABCD1 gene, which encodes the peroxisomal ATP-binding transporter for very-long-chain fatty acids. The clinical spectrum of ALD includes adrenal insufficiency, myelopathy, and/or leukodystrophy. A complicating factor in disease management is the absence of a genotype–phenotype correlation in ALD. Since 1999, most ABCD1 (likely) pathogenic and benign variants have been reported in the ABCD1 Variant Database. In 2017, following the expansion of ALD newborn screening, the database was rebuilt. To add an additional level of confidence with respect to pathogenicity, for each variant, it now also reports the number of cases identified and, where available, experimental data supporting the pathogenicity of the variant. The website also provides information on a number of ALD-related topics in several languages. Here, we provide an updated analysis of the known variants in ABCD1. The order of pathogenic variant frequency, overall clustering of disease-causing variants in exons 1–2 (transmembrane domain spanning region) and 6–9 (ATP-binding domain), and the most commonly reported pathogenic variant p.Gln472Argfs*83 in exon 5 are consistent with the initial reports of the mutation database. Novel insights include nonran-dom clustering of high-density missense variant hotspots within exons 1, 2, 6, 8, and 9. Perhaps more importantly, we illustrate the importance of collaboration and utility of the database as a scientific, clinical, and ALD-community-wide resource. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
Keywords: gene mutation; single nucleotide polymorphism; genetics; missense mutation; mutation; nuclear magnetic resonance imaging; genetic analysis; protein function; phenotype; genetic variability; structure activity relation; tumor suppressor gene; medical education; sequence alignment; genetic susceptibility; diagnosis; abc transporter; molecular epidemiology; protein structure; bioinformatics; genetic screening; newborn screening; genetic counseling; intrauterine growth retardation; microcephaly; virus isolation; adrenal insufficiency; corpus callosum; adrenoleukodystrophy; corticotropin; muscle hypotonia; autism; spinal muscular atrophy; familial hypercholesterolemia; human; article; developmental delay; whole exome sequencing; peroxisome; variants of uncertain significance; abcd1; abc transporter d1
Journal Title: Cells
Volume: 11
Issue: 2
ISSN: 2073-4409
Publisher: MDPI  
Date Published: 2022-01-02
Start Page: 283
Language: English
DOI: 10.3390/cells11020283
PROVIDER: scopus
PMCID: PMC8773697
PUBMED: 35053399
DOI/URL:
Notes: Article -- Export Date: 1 February 2022 -- Source: Scopus
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