Evaluation of an RNAseq-based immunogenomic liquid biopsy approach in early-stage prostate cancer Journal Article


Authors: Van Neste, L.; Wojno, K. J.; Henao, R.; Mane, S.; Korman, H.; Hafron, J.; Kernen, K.; Tinawi-Aljundi, R.; Putzi, M.; Kassis, A. I.; Kantoff, P. W.
Article Title: Evaluation of an RNAseq-based immunogenomic liquid biopsy approach in early-stage prostate cancer
Abstract: The primary objective of this study is to detect biomarkers and develop models that enable the identification of clinically significant prostate cancer and to understand the biologic implications of the genes involved. Peripheral blood samples (1018 patients) were split chronologically into independent training (n = 713) and validation (n = 305) sets. Whole transcriptome RNA sequencing was performed on isolated phagocytic CD14+ and non-phagocytic CD2+ cells and their gene expression levels were used to develop predictive models that correlate to adverse pathologic features. The immune-transcriptomic model with the highest performance for predicting adverse pathology, based on a subtraction of the log-transformed expression signals of the two cell types, displayed an area under the curve (AUC) of the receiver operating characteristic of 0.70. The addition of biomarkers in combination with traditional clinical risk factors (age, serum prostate-specific antigen (PSA), PSA density, race, digital rectal examination (DRE), and family history) enhanced the AUC to 0.91 and 0.83 for the training and validation sets, respectively. The markers identified by this approach uncovered specific pathway associations relevant to (prostate) cancer biology. Increased phagocytic activity in conjunction with cancer-associated (mis-)regulation is also represented by these markers. Differential gene expression of circulating immune cells gives insight into the cellular immune response to early tumor development and immune surveillance. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Keywords: aged; major clinical study; area under the curve; flow cytometry; biological marker; prostate specific antigen; melanoma; gene expression; inflammation; cell differentiation; transcriptomics; dna methylation; risk factor; prostate cancer; gleason score; cellular immunity; immune response; prostatectomy; glioblastoma; prostate biopsy; phagocytosis; cell separation; transcriptome; kidney biopsy; tumor necrosis factor; digital rectal examination; cells; wnt signaling; prostate volume; immune; acute myeloid leukemia; boosting; gradient; cancer; human; male; article; rna sequencing; cyanobacterium; liquid biopsy; cd14+; cd2+
Journal Title: Cells
Volume: 10
Issue: 10
ISSN: 2073-4409
Publisher: MDPI  
Date Published: 2021-10-01
Start Page: 2567
Language: English
DOI: 10.3390/cells10102567
PROVIDER: scopus
PMCID: PMC8533765
PUBMED: 34685549
DOI/URL:
Notes: Article -- Export Date: 2 November 2021 -- Source: Scopus
Altmetric
Citation Impact
BMJ Impact Analytics
MSK Authors
  1. Philip Wayne Kantoff
    197 Kantoff