Glioblastoma subclasses can be defined by activity among signal transduction pathways and associated genomic alterations Journal Article


Authors: Brennan, C.; Momota, H.; Hambardzumyan, D.; Ozawa, T.; Tandon, A.; Pedraza, A.; Holland, E.
Article Title: Glioblastoma subclasses can be defined by activity among signal transduction pathways and associated genomic alterations
Abstract: Background: Glioblastoma multiforme (GBM) is an umbrella designation that includes a heterogeneous group of primary brain tumors. Several classification strategies of GBM have been reported, some by clinical course and others by resemblance to cell types either in the adult or during development. From a practical and therapeutic standpoint, classifying GBMs by signal transduction pathway activation and by mutation in pathway member genes may be particularly valuable for the development of targeted therapies. Methodology/Principal Findings: We performed targeted proteomic analysis of 27 surgical glioma samples to identify patterns of coordinate activation among glioma-relevant signal transduction pathways, then compared these results with integrated analysis of genomic and expression data of 243 GBM samples from The Cancer Genome Atlas (TCGA). In the pattern of signaling, three subclasses of GBM emerge which appear to be associated with predominance of EGFR activation, PDGFR activation, or loss of the RAS regulator NF1. The EGFR signaling class has prominent Notch pathway activation measured by elevated expression of Notch ligands, cleaved Notch receptor, and downstream target Hes1. The PDGF class showed high levels of PDGFB ligand and phosphorylation of PDGFRβ and NFKB. NF1-loss was associated with lower overall MAPK and PI3K activation and relative overexpression of the mesenchymal marker YKL40. These three signaling classes appear to correspond with distinct transcriptomal subclasses of primary GBM samples from TCGA for which copy number aberration and mutation of EGFR, PDGFRA, and NF1 are signature events. Conclusions/Significance: Proteomic analysis of GBM samples revealed three patterns of expression and activation of proteins in glioma-relevant signaling pathways. These three classes are comprised of roughly equal numbers showing either EGFR activation associated with amplification and mutation of the receptor, PDGF-pathway activation that is primarily ligand-driven, or loss of NF1 expression. The associated signaling activities correlating with these sentinel alterations provide insight into glioma biology and therapeutic strategies. © 2009 Brennan et al.
Keywords: signal transduction; platelet derived growth factor; adult; clinical article; aged; middle aged; gene mutation; brain tumor; methodology; brain neoplasms; metabolism; gene targeting; gene overexpression; gene amplification; gene expression; biological model; classification; models, biological; epidermal growth factor receptor; notch receptor; receptor, epidermal growth factor; oncology; proteomics; gene number; genome analysis; gene activation; glioblastoma; platelet-derived growth factor; ligand; medical oncology; neurofibromin; gene duplication; gene loss; genomics; ligands; neurofibromin 1
Journal Title: PLoS ONE
Volume: 4
Issue: 11
ISSN: 1932-6203
Publisher: Public Library of Science  
Date Published: 2009-11-13
Start Page: e7752
Language: English
DOI: 10.1371/journal.pone.0007752
PUBMED: 19915670
PROVIDER: scopus
PMCID: PMC2771920
DOI/URL:
Notes: --- - "Cited By (since 1996): 11" - "Export Date: 30 November 2010" - "Art. No.: e7752" - "Source: Scopus"
Altmetric
Citation Impact
MSK Authors
  1. Hiroyuki Momota
    6 Momota
  2. Cameron Brennan
    165 Brennan
  3. Eric Holland
    224 Holland
  4. Adesh Tandon
    2 Tandon
  5. Tatsuya Ozawa
    16 Ozawa
  6. Alicia Maria Pedraza
    20 Pedraza