An empirical framework for domain generalization in clinical settings Conference Paper


Authors: Zhang, H.; Dullerud, N.; Seyyed-Kalantari, L.; Morris, Q.; Joshi, S.; Ghassemi, M.
Title: An empirical framework for domain generalization in clinical settings
Conference Title: ACM CHIL '21: ACM Conference on Health, Inference, and Learning
Abstract: Clinical machine learning models experience significantly degraded performance in datasets not seen during training, e.g., new hospitals or populations. Recent developments in domain generalization offer a promising solution to this problem by creating models that learn invariances across environments. In this work, we benchmark the performance of eight domain generalization methods on multi-site clinical time series and medical imaging data. We introduce a framework to induce synthetic but realistic domain shifts and sampling bias to stress-test these methods over existing non-healthcare benchmarks. We find that current domain generalization methods do not achieve significant gains in out-of-distribution performance over empirical risk minimization on real-world medical imaging data, in line with prior work on general imaging datasets. However, a subset of realistic induced-shift scenarios in clinical time series data exhibit limited performance gains. We characterize these scenarios in detail, and recommend best practices for domain generalization in the clinical setting. © 2021 Owner/Author.
Keywords: medical imaging; benchmarking; clinical settings; best practices; time series; machine learning models; clinical time series; degraded performance; empirical risk minimization; performance gain; realistic domains
Journal Title ACM CHIL 2021: Proceedings of the ACM Conference on Health, Inference, and Learning
Conference Dates: 2021 Apr 8-9
Conference Location: Virtual Event
ISBN: 978-1-4503-8359-2
Publisher: Assoc Computing Machinery  
Date Published: 2021-01-01
Start Page: 279
End Page: 290
Language: English
DOI: 10.1145/3450439.3451878
PROVIDER: scopus
DOI/URL:
Notes: Conference Paper -- Export Date: 3 May 2021 -- Source: Scopus
Altmetric
Citation Impact
BMJ Impact Analytics
MSK Authors
  1. Quaid Morris
    36 Morris