IpdE1-IpdE2 is a heterotetrameric acyl coenzyme A dehydrogenase that is widely distributed in steroid-degrading bacteria Journal Article


Authors: Gadbery, J. E.; Round, J. W.; Yuan, T.; Wipperman, M. F.; Story, K. T.; Crowe, A. M.; Casabon, I.; Liu, J.; Yang, X.; Eltis, L. D.; Sampson, N. S.
Article Title: IpdE1-IpdE2 is a heterotetrameric acyl coenzyme A dehydrogenase that is widely distributed in steroid-degrading bacteria
Abstract: Steroid-degrading bacteria, including Mycobacterium tuberculosis (Mtb), utilize an architecturally distinct subfamily of acyl coenzyme A dehydrogenases (ACADs) for steroid catabolism. These ACADs are α2β2 heterotetramers that are usually encoded by adjacent fadE-like genes. In mycobacteria, ipdE1 and ipdE2 (formerly fadE30 and fadE33) occur in divergently transcribed operons associated with the catabolism of 3aα-H-4α(3′-propanoate)-7aβ-methylhexahydro-1,5-indanedione (HIP), a steroid metabolite. In Mycobacterium smegmatis, ΔipdE1 and ΔipdE2 mutants had similar phenotypes, showing impaired growth on cholesterol and accumulating 5-OH HIP in the culture supernatant. Bioinformatic analyses revealed that IpdE1 and IpdE2 share many of the features of the α- and β-subunits, respectively, of heterotetrameric ACADs that are encoded by adjacent genes in many steroid-degrading proteobacteria. When coproduced in a rhodococcal strain, IpdE1 and IpdE2 of Mtb formed a complex that catalyzed the dehydrogenation of 5OH-HIP coenzyme A (5OH-HIP-CoA) to 5OH-3aα-H-4α(3′-prop-1-enoate)-7aβ-methylhexa-hydro-1,5-indanedione coenzyme A ((E)-5OH-HIPE-CoA). This corresponds to the initial step in the pathway that leads to degradation of steroid C and D rings via β-oxidation. Small-angle X-ray scattering revealed that the IpdE1-IpdE2 complex was an α2β2 heterotetramer typical of other ACADs involved in steroid catabolism. These results provide insight into an important class of steroid catabolic enzymes and a potential virulence determinant in Mtb. Copyright © 2020 American Chemical Society.
Keywords: unclassified drug; gene deletion; nonhuman; phenotype; metabolism; complex formation; genes; gene expression; steroid; bacterial strain; bacterial virulence; mycobacterium tuberculosis; crystal structure; catalysis; x ray crystallography; bioinformatics; alpha chain; enzyme localization; bacterial gene; coenzymes; mycobacterium smegmatis; bacterial growth; catabolism; dna purification; operon; bacteria; culture supernatant; biodegradation; metabolites; beta chain; microbial degradation; fatty acid oxidation; proteobacteria; steroid metabolism; x ray scattering; synteny; priority journal; article; acyl-coenzymes; bioinformatic analysis; catabolic enzymes; degrading bacteria; heterotetramers; acyl coenzyme a dehydrogenase; ipde1 protein; ipde2 protein; dehydrogenation; ipde1 gene; ipde2 gene
Journal Title: Biochemistry
Volume: 59
Issue: 10
ISSN: 0006-2960
Publisher: American Chemical Society  
Date Published: 2020-03-17
Start Page: 1113
End Page: 1123
Language: English
DOI: 10.1021/acs.biochem.0c00005
PUBMED: 32101684
PROVIDER: scopus
PMCID: PMC7081610
DOI/URL:
Notes: Article -- Source: Scopus
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