JAK2/PD-L1/PD-L2 (9p24.1) amplifications in renal cell carcinomas with sarcomatoid transformation: Implications for clinical management Journal Article


Authors: Gupta, S.; Cheville, J. C.; Jungbluth, A. A.; Zhang, Y.; Zhang, L.; Chen, Y. B.; Tickoo, S. K.; Fine, S. W.; Gopalan, A.; Al-Ahmadie, H. A.; Sirintrapun, S. J.; Blum, K. A.; Lohse, C. M.; Hakimi, A. A.; Thompson, R. H.; Leibovich, B. C.; Berger, M. F.; Arcila, M. E.; Ross, D. S.; Ladanyi, M.; Antonescu, C. R.; Reuter, V. E.
Article Title: JAK2/PD-L1/PD-L2 (9p24.1) amplifications in renal cell carcinomas with sarcomatoid transformation: Implications for clinical management
Abstract: Amplifications of JAK2, PD-L1, and PD-L2 at 9p24.1 lead to constitutive expression of PD-L1. This, coupled with JAK2-activation dependent upregulation of PD-L1 and adaptive/induced expression leads to higher tumor PD-L1 expression and immune evasion. Renal tumors were therefore evaluated for 9p24.1 amplifications. A combination of next generation sequencing-based copy number analysis, fluorescence in situ hybridization for JAK2/INSL6 and PD-L1/PD-L2 and immunohistochemistry for phospho-STAT3 (downstream target of JAK2), PD-L1, PD-L2, and PD-1 was performed. In this study we interrogated a “Discovery” cohort of 593 renal tumors, a “Validation” cohort of 398 high-grade renal tumors, The Cancer Genome Atlas (879 cases) and other public datasets (846 cases). 9p24.1 amplifications were significantly enriched in renal tumors with sarcomatoid transformation (5.95%, 15/252) when compared to all histologic subtypes in the combined “Discovery”, “Validation” and public datasets (16/2636, 0.6%, p < 0.00001). Specifically, 9p24.1 amplifications amongst sarcomatoid tumors in public datasets, the “Discovery” and “Validation” cohorts were 7.7% (6/92), 15.1% (5/33), and 3.1% (4/127), respectively. Herein, we describe 13 cases and amplification status for these was characterized using next generation sequencing (n = 9) and/or fluorescence in situ hybridization (n = 10). Correlation with PD-L1 immunohistochemistry (n = 10) revealed constitutive expression (mean H-score: 222/300, n = 10). Analysis of outcomes based on PD-L1 expression in tumor cells performed on 282 cases (“Validation” cohort) did not reveal a significant prognostic effect and was likely reflective of advanced disease. A high incidence of constitutive PD-L1 expression in tumor cells in the “Validation” cohort (H-Score ≥250/300) was noted amongst 83 rhabdoid (6%) and 127 sarcomatoid renal tumors (7.1%). This suggests additional mechanisms of constitutive expression other than amplification events. Importantly, two patients with 9p24.1-amplified sarcomatoid renal tumors showed significant response to immunotherapy. In summary, a subset of renal tumors with sarcomatoid transformation exhibits constitutive PD-L1 overexpression and these patients should be evaluated for enhanced response to immunotherapy. © 2019, United States & Canadian Academy of Pathology.
Journal Title: Modern Pathology
Volume: 32
Issue: 9
ISSN: 0893-3952
Publisher: Nature Research  
Date Published: 2019-09-01
Start Page: 1344
End Page: 1358
Language: English
DOI: 10.1038/s41379-019-0269-x
PUBMED: 30996253
PROVIDER: scopus
PMCID: PMC7189735
DOI/URL:
Notes: Source: Scopus
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MSK Authors
  1. Cristina R Antonescu
    838 Antonescu
  2. Satish K Tickoo
    461 Tickoo
  3. Anuradha Gopalan
    392 Gopalan
  4. Marc Ladanyi
    1279 Ladanyi
  5. Yingbei Chen
    369 Chen
  6. Achim Jungbluth
    438 Jungbluth
  7. Michael Forman Berger
    707 Berger
  8. Samson W Fine
    438 Fine
  9. Maria Eugenia Arcila
    623 Arcila
  10. Victor Reuter
    1199 Reuter
  11. Dara Stacy Ross
    118 Ross
  12. Lei Zhang
    194 Zhang
  13. Abraham Ari Hakimi
    299 Hakimi
  14. Yanming Zhang
    172 Zhang
  15. Sounak Gupta
    32 Gupta
  16. Kyle Blum
    38 Blum