Germline predisposition and copy number alteration in pre-stage lung adenocarcinomas presenting as ground-glass nodules Journal Article


Authors: Ren, Y.; Huang, S.; Dai, C.; Xie, D.; Zheng, L.; Xie, H.; Zheng, H.; She, Y.; Zhou, F.; Wang, Y.; Li, P.; Fei, K.; Jiang, G.; Zhang, Y.; Su, B.; Sweet-Cordero, E. A.; Tran, N. L.; Yang, Y.; Patel, J. N.; Rolfo, C.; Rocco, G.; Cardona, A. F.; Tuzi, A.; Suter, M. B.; Yang, P.; Xu, W.; Chen, C.
Article Title: Germline predisposition and copy number alteration in pre-stage lung adenocarcinomas presenting as ground-glass nodules
Abstract: Objective: Synchronous multiple ground-glass nodules (SM-GGNs) are a distinct entity of lung cancer which has been emerging increasingly in recent years in China. The oncogenesis molecular mechanisms of SM-GGNs remain elusive. Methods: We investigated single nucleotide variations (SNV), insertions and deletions (INDEL), somatic copy number variations (CNV), and germline mutations of 69 SM-GGN samples collected from 31 patients, using target sequencing (TRS) and whole exome sequencing (WES). Results: In the entire cohort, many known driver mutations were found, including EGFR (21.7%), BRAF (14.5%), and KRAS (6%). However, only one out of the 31 patients had the same somatic missense or truncated events within SM-GGNs, indicating the independent origins for almost all of these SM-GGNs. Many germline mutations with a low frequency in the Chinese population, and genes harboring both germline and somatic variations, were discovered in these pre-stage GGNs. These GGNs also bore large segments of copy number gains and/or losses. The CNV segment number tended to be positively correlated with the germline mutations (r = 0.57). The CNV sizes were correlated with the somatic mutations (r = 0.55). A moderate correlation (r = 0.54) was also shown between the somatic and germline mutations. Conclusion: Our data suggests that the precancerous unstable CNVs with potentially predisposing genetic backgrounds may foster the onset of driver mutations and the development of independent SM-GGNs during the local stimulation of mutagens. © 2007-2019 Frontiers Media S.A. All Rights Reserved.
Journal Title: Frontiers in Oncology
Volume: 9
ISSN: 2234-943X
Publisher: Frontiers Media S.A.  
Date Published: 2019-04-18
Start Page: 288
Language: English
DOI: 10.3389/fonc.2019.00288
PROVIDER: scopus
PMCID: PMC6482264
PUBMED: 31058088
DOI/URL:
Notes: Article -- Source: Scopus
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  1. Gaetano Rocco
    130 Rocco