MANTIS: Model-Augmented Neural neTwork with Incoherent k-space Sampling for efficient MR parameter mapping Journal Article


Authors: Liu, F.; Feng, L.; Kijowski, R.
Article Title: MANTIS: Model-Augmented Neural neTwork with Incoherent k-space Sampling for efficient MR parameter mapping
Abstract: Purpose: To develop and evaluate a novel deep learning-based image reconstruction approach called MANTIS (Model-Augmented Neural neTwork with Incoherent k-space Sampling) for efficient MR parameter mapping. Methods: MANTIS combines end-to-end convolutional neural network (CNN) mapping, incoherent k-space undersampling, and a physical model as a synergistic framework. The CNN mapping directly converts a series of undersampled images straight into MR parameter maps using supervised training. Signal model fidelity is enforced by adding a pathway between the undersampled k-space and estimated parameter maps to ensure that the parameter maps produced synthesized k-space consistent with the acquired undersampling measurements. The MANTIS framework was evaluated on the T 2 mapping of the knee at different acceleration rates and was compared with 2 other CNN mapping methods and conventional sparsity-based iterative reconstruction approaches. Global quantitative assessment and regional T 2 analysis for the cartilage and meniscus were performed to demonstrate the reconstruction performance of MANTIS. Results: MANTIS achieved high-quality T 2 mapping at both moderate (R = 5) and high (R = 8) acceleration rates. Compared to conventional reconstruction approaches that exploited image sparsity, MANTIS yielded lower errors (normalized root mean square error of 6.1% for R = 5 and 7.1% for R = 8) and higher similarity (structural similarity index of 86.2% at R = 5 and 82.1% at R = 8) to the reference in the T 2 estimation. MANTIS also achieved superior performance compared to direct CNN mapping and a 2-step CNN method. Conclusion: The MANTIS framework, with a combination of end-to-end CNN mapping, signal model-augmented data consistency, and incoherent k-space sampling, is a promising approach for efficient and robust estimation of quantitative MR parameters. © 2019 International Society for Magnetic Resonance in Medicine
Keywords: quantitative analysis; image reconstruction; error; sampling; knee meniscus; acceleration; article; physical model; deep learning; convolutional neural network; incoherence k-space sampling; model augmentation; model-based reconstruction; mr parameter mapping
Journal Title: Magnetic Resonance in Medicine
Volume: 82
Issue: 1
ISSN: 0740-3194
Publisher: John Wiley & Sons  
Date Published: 2019-07-01
Start Page: 174
End Page: 188
Language: English
DOI: 10.1002/mrm.27707
PUBMED: 30860285
PROVIDER: scopus
PMCID: PMC7144418
DOI/URL:
Notes: Article -- Export Date: 3 June 2019 -- Source: Scopus
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  1. Li Feng
    10 Feng