Minimotif miner 2nd release: A database and web system for motif search Journal Article
| Authors: | Rajasekaran, S.; Balla, S.; Gradie, P.; Gryk, M. R.; Kadaveru, K.; Kundeti, V.; Maciejewski, M. W.; Mi, T.; Rubino, N.; Vyas, J.; Schiller, M. R. |
| Article Title: | Minimotif miner 2nd release: A database and web system for motif search |
| Abstract: | Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu. © 2008 The Author(s). |
| Keywords: | single nucleotide polymorphism; polymorphism, single nucleotide; protein function; protein motif; protein analysis; computer interface; internet; user-computer interface; mutational analysis; databases, protein; prediction; nucleotide sequence; protein database; protein interaction domains and motifs; amino acid motifs; prion protein; minimotif miner 2 database; prions; sequence analysis, protein; alias |
| Journal Title: | Nucleic Acids Research |
| Volume: | 37 |
| Issue: | SUPPL. 1 |
| ISSN: | 0305-1048 |
| Publisher: | Oxford University Press |
| Date Published: | 2009-01-01 |
| Start Page: | D185 |
| End Page: | D190 |
| Language: | English |
| DOI: | 10.1093/nar/gkn865 |
| PUBMED: | 18978024 |
| PROVIDER: | scopus |
| PMCID: | PMC2686579 |
| DOI/URL: | |
| Notes: | --- - "Cited By (since 1996): 8" - "Export Date: 30 November 2010" - "CODEN: NARHA" - "Source: Scopus" |
