A pilot study for distinguishing chromophobe renal cell carcinoma and oncocytoma using second harmonic generation imaging and convolutional neural network analysis of collagen fibrillar structure Conference Paper


Authors: Judd, N.; Smith, J.; Jain, M.; Mukherjee, S.; Icaza, M.; Gallagher, R.; Szeligowski, R.; Wu, B.
Editors: Alfano, R. R.; Demos, S. G.
Title: A pilot study for distinguishing chromophobe renal cell carcinoma and oncocytoma using second harmonic generation imaging and convolutional neural network analysis of collagen fibrillar structure
Conference Title: Optical Biopsy XVI: Toward Real-Time Spectroscopic Imaging and Diagnosis
Abstract: A clear distinction between oncocytoma and chromophobe renal cell carcinoma (chRCC) is critically important for clinical management of patients. But it may often be difficult to distinguish the two entities based on hematoxylin and eosin (H and E) stained sections alone. In this study, second harmonic generation (SHG) signals which are very specific to collagen were used to image collagen fibril structure. We conduct a pilot study to develop a new diagnostic method based on the analysis of collagen associated with kidney tumors using convolutional neural networks (CNNs). CNNs comprise a type of machine learning process well-suited for drawing information out of images. This study examines a CNN model's ability to differentiate between oncocytoma (benign), and chRCC (malignant) kidney tumor images acquired with second harmonic generation (SHG), which is very specific for collagen matrix. To the best of our knowledge, this is the first study that attempts to distinguish the two entities based on their collagen structure. The model developed from this study demonstrated an overall classification accuracy of 68.7% with a specificity of 66.3% and sensitivity of 74.6%. While these results reflect an ability to classify the kidney tumors better than chance, further studies will be carried out to (a) better realize the tumor classification potential of this method with a larger sample size and (b) combining SHG with two-photon excited intrinsic fluorescence signal to achieve better classification. © COPYRIGHT SPIE. Downloading of the abstract is permitted for personal use only.
Keywords: fluorescence; patient monitoring; biopsy; renal cell carcinoma; kidney tumor; tumors; collagen; multiphoton microscopy; tumor classification; harmonic analysis; multiphoton processes; chromophobe renal cell carcinoma; machine learning; renal oncocytoma; learning systems; neural networks; biomedical signal processing; convolution; convolutional neural network; classification accuracy; second harmonic generation; convolutional neural networks (cnn); multiphoton microscopy (mpm); nonlinear optics; intrinsic fluorescence signals; harmonic generation
Journal Title Proceedings of SPIE
Volume: 10489
Conference Dates: 2018 Jan 30-31
Conference Location: San Francisco, CA
ISBN: 0277-786X
Publisher: SPIE  
Date Published: 2018-01-01
Start Page: 10489 19
Language: English
DOI: 10.1117/12.2288088
PROVIDER: scopus
DOI/URL:
Notes: Conference Paper -- Export Date: 1 June 2018 -- Source: Scopus
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  1. Manu   Jain
    76 Jain