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  1. Xavier
    Xavier
  2. Leslie
    Leslie
  3. Liao
    Liao
  4. Chodera
    Chodera
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    Gross
  6. Kamboj
    Kamboj
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    Sheridan
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    Sumer

Groups

  1. Computational Biology Program Faculty (17)
  2. Sloan Kettering Institute Faculty (17)
  3. Center for Molecular Imaging and Biotechnology (13)
  4. GSK Faculty (13)
  5. Sloan Kettering Institute Postdocs (6)
  6. MSK Grad Students (2)
  7. Department of Medicine (1)
  8. Division of Subspecialty Medicine (1)
  9. Infectious Disease (1)
Search Within
  1. "Computational Biology Program Faculty"
Formats
  1. Journal Article (17)
Groups
  1. Computational Biology Program Faculty (17)
  2. Sloan Kettering Institute Faculty (17)
  3. Center for Molecular Imaging and Biotechnology (13)
  4. GSK Faculty (13)
  5. Sloan Kettering Institute Postdocs (6)
  6. MSK Grad Students (2)

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People
  1. Joao Xavier (7)
  2. Christina Leslie (5)
  3. Chris Sander (4)
  4. Chen Liao (2)
  5. Jinyuan Yan (2)
  6. Kerry Boyle (2)

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Years
  1. 2020 (2)
  2. 2019 (1)
  3. 2017 (1)
  4. 2016 (2)
  5. 2015 (3)
  6. 2013 (1)

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Publications
  1. PLoS Computational Biology (17)

Results (17)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence
    Journal Article

    Liao, C.; Wang, T.; Maslov, S.; Xavier, J. B.
    PLoS Computational Biology (2020)

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  • Compositional Lotka-Volterra describes microbial dynamics in the simplex
    Journal Article

    Joseph, T. A.; Shenhav, L.; Xavier, J. B.; Halperin, E.; Pe’er, I.
    PLoS Computational Biology (2020)

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  • Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection
    Journal Article

    Yan, J.; Estanbouli, H.; Liao, C.; Kim, W.; Monk, J. M.; Rahman, R.; Kamboj, M.; Palsson, B. O.; Qiu, W.; Xavier, J. B.
    PLoS Computational Biology (2019)

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  • Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network
    Journal Article

    Yan, J.; Deforet, M.; Boyle, K. E.; Rahman, R.; Liang, R.; Okegbe, C.; Dietrich, L. E. P.; Qiu, W.; Xavier, J. B.
    PLoS Computational Biology (2017)

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  • Learning to predict miRNA-mRNA interactions from AGO CLIP sequencing and CLASH data
    Journal Article

    Lu, Y.; Leslie, C. S.
    PLoS Computational Biology (2016)

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  • Ensembler: Enabling high-throughput molecular simulations at the superfamily scale
    Journal Article

    Parton, D. L.; Grinaway, P. B.; Hanson, S. M.; Beauchamp, K. A.; Chodera, J. D.
    PLoS Computational Biology (2016)

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  • Integration of metabolic and quorum sensing signals governing the decision to cooperate in a bacterial social trait
    Journal Article

    Boyle, K. E.; Monaco, H.; Van Ditmarsch, D.; Deforet, M.; Xavier, J. B.
    PLoS Computational Biology (2015)

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  • Inferring pairwise interactions from biological data using maximum-entropy probability models
    Journal Article

    Stein, R. R.; Marks, D. S.; Sander, C.
    PLoS Computational Biology (2015)

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  • SeqGL identifies context-dependent binding signals in genome-wide regulatory element maps
    Journal Article

    Setty, M.; Leslie, C. S.
    PLoS Computational Biology (2015)

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  • Using Biological Pathway Data with Paxtools
    Journal Article

    Demir, E.; Babur, O.; Rodchenkov, I.; Aksoy, B. A.; Fukuda, K. I.; Gross, B.; Sümer, O. S.; Bader, G. D.; Sander, C.
    PLoS Computational Biology (2013)

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