Public Library of Science

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  1. Xavier
    Xavier
  2. Leslie
    Leslie
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    Zhao
  4. Levine
    Levine
  5. Liao
    Liao
  6. Shah
    Shah
  7. Ventura
    Ventura
  8. Balachandran
    Balachandran
  9. Chodera
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Groups

  1. Center for Molecular Imaging and Biotechnology (26)
  2. GSK Faculty (26)
  3. Sloan Kettering Institute Faculty (20)
  4. Computational Biology Program Faculty (13)
  5. Sloan Kettering Institute Postdocs (9)
  6. Epidemiology and Biostatistics (5)
  7. Molecular Biology Program Faculty (5)
  8. Computational Oncology Service (4)
  9. Department of Medicine (3)
  10. Human Oncology and Pathogenesis Program (3)
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  1. "Center for Molecular Imaging and Biotechnology"
Formats
  1. Journal Article (26)
Groups
  1. Center for Molecular Imaging and Biotechnology (26)
  2. GSK Faculty (26)
  3. Sloan Kettering Institute Faculty (20)
  4. Computational Biology Program Faculty (13)
  5. Sloan Kettering Institute Postdocs (9)
  6. Epidemiology and Biostatistics (5)

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People
  1. Joao Xavier (7)
  2. Christina Leslie (5)
  3. Xiaolan Zhao (5)
  4. Andrea Ventura (2)
  5. Carla Concepcion (2)
  6. Chen Liao (2)

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Years
  1. 2023 (1)
  2. 2021 (1)
  3. 2020 (3)
  4. 2019 (3)
  5. 2018 (1)
  6. 2017 (1)

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Publications
  1. PLoS Computational Biology (18)
  2. PLoS Genetics (7)
  3. PLoS Digital Health (1)

Results (26)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • Learning to predict miRNA-mRNA interactions from AGO CLIP sequencing and CLASH data
    Journal Article

    Lu, Y.; Leslie, C. S.
    PLoS Computational Biology (2016)

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  • Ensembler: Enabling high-throughput molecular simulations at the superfamily scale
    Journal Article

    Parton, D. L.; Grinaway, P. B.; Hanson, S. M.; Beauchamp, K. A.; Chodera, J. D.
    PLoS Computational Biology (2016)

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  • Binding of the Fkh1 forkhead associated domain to a phosphopeptide within the Mph1 DNA helicase regulates mating-type awitching in budding yeast
    Journal Article

    Dummer, A. M.; Su, Z.; Cherney, R.; Choi, K.; Denu, J.; Zhao, X.; Fox, C. A.
    PLoS Genetics (2016)

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  • Integration of metabolic and quorum sensing signals governing the decision to cooperate in a bacterial social trait
    Journal Article

    Boyle, K. E.; Monaco, H.; Van Ditmarsch, D.; Deforet, M.; Xavier, J. B.
    PLoS Computational Biology (2015)

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  • SeqGL identifies context-dependent binding signals in genome-wide regulatory element maps
    Journal Article

    Setty, M.; Leslie, C. S.
    PLoS Computational Biology (2015)

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  • Sumoylation influences DNA break repair partly by increasing the solubility of a conserved end resection protein
    Journal Article

    Sarangi, P.; Steinacher, R.; Altmannova, V.; Fu, Q.; Paull, T. T.; Krejci, L.; Whitby, M. C.; Zhao, X.
    PLoS Genetics (2015)

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  • Pathway thermodynamics highlights kinetic obstacles in central metabolism
    Journal Article

    Noor, E.; Bar-Even, A.; Flamholz, A.; Reznik, E.; Liebermeister, W.; Milo, R.
    PLoS Computational Biology (2014)

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  • Intact p53-dependent responses in miR-34-deficient mice
    Journal Article

    Concepcion, C. P.; Han, Y. C.; Mu, P.; Bonetti, C.; Yao, E.; D'Andrea, A.; Vidigal, J. A.; Maughan, W. P.; Ogrodowski, P.; Ventura, A.
    PLoS Genetics (2012)

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  • Social interaction, noise and antibiotic-mediated switches in the intestinal microbiota
    Journal Article

    Bucci, V.; Bradde, S.; Biroli, G.; Xavier, J. B.
    PLoS Computational Biology (2012)

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  • A mathematical methodology for determining the temporal order of pathway alterations arising during gliomagenesis
    Journal Article

    Cheng, Y. K.; Beroukhim, R.; Levine, R. L.; Mellinghoff, I. K.; Holland, E. C.; Michor, F.
    PLoS Computational Biology (2012)

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