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Phaedra Agius

Formats
  1. Journal Article (11)
Groups
  1. GSK Faculty (8)
  2. Center for Molecular Imaging and Biotechnology (CMIB) (6)
  3. Computational and Structural Biology Program Faculty (6)
  4. Sloan Kettering Institute Faculty (6)
  5. Surgery (4)
  6. Biostatistics Service (3)

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People
  1. Christina Leslie (6)
  2. Aaron Arvey (4)
  3. Li-Xuan Qin (3)
  4. Nicholas Socci (3)
  5. Aimee Crago (2)
  6. Chris Sander (2)

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Years
  1. 2017 (1)
  2. 2016 (1)
  3. 2015 (1)
  4. 2013 (1)
  5. 2012 (2)
  6. 2011 (1)

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Publications
  1. Genome Research (2)
  2. Cancer Discovery (1)
  3. Cancer Research (1)
  4. Genes Chromosomes and Cancer (1)
  5. Genome Biology (1)
  6. Molecular Systems Biology (1)

More Publications

Publishers
  1. Cold Spring Harbor Laboratory Press (3)
  2. American Association for Cancer Research (2)
  3. Nature Publishing Group (2)
  4. Biomed Central Ltd (1)
  5. Public Library of Science (1)
  6. The Berkeley Electronic Press (1)

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Results (11)

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Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • miR-193b-regulated signaling networks serve as tumor suppressors in liposarcoma and promote adipogenesis in adipose-derived stem cells
    Journal Article

    Mazzu, Y. Z.; Hu, Y.; Soni, R. K.; Mojica, K. M.; Qin, L. X.; Agius, P.; Waxman, Z. M.; Mihailovic, A.; Socci, N. D.; Hendrickson, R. C.; more...
    Cancer Research (2017)

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  • Integrin-α10 dependency identifies RAC and RICTOR as therapeutic targets in high-grade myxofibrosarcoma
    Journal Article

    Okada, T.; Lee, A. Y.; Qin, L. X.; Agaram, N.; Mimae, T.; Shen, Y.; O’Connor, R.; López-Lago, M. A.; Craig, A.; Miller, M. L.; more...
    Cancer Discovery (2016)

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  • Near universal detection of alterations in CTNNB1 and Wnt pathway regulators in desmoid-type fibromatosis by whole-exome sequencing and genomic analysis
    Journal Article

    Crago, A. M.; Chmielecki, J.; Rosenberg, M.; O'Connor, R.; Byrne, C.; Wilder, F. G.; Thorn, K.; Agius, P.; Kuk, D.; Socci, N. D.; more...
    Genes Chromosomes and Cancer (2015)

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  • Evaluation of methods for modeling transcription factor sequence specificity
    Journal Article

    Weirauch, M. T.; Cote, A.; Norel, R.; Annala, M.; Zhao, Y.; Riley, T. R.; Saez-Rodriguez, J.; Cokelaer, T.; Vedenko, A.; Talukder, S.; more...
    Nature Biotechnology (2013)

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  • Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma
    Journal Article

    Setty, M.; Helmy, K.; Khan, A. A.; Silber, J.; Arvey, A.; Neezen, F.; Agius, P.; Huse, J. T.; Holland, E. C.; Leslie, C. S.
    Molecular Systems Biology (2012)

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  • Sequence and chromatin determinants of cell-type-specific transcription factor binding
    Journal Article

    Arvey, A.; Agius, P.; Noble, W. S.; Leslie, C.
    Genome Research (2012)

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  • Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
    Journal Article

    Chung, W. J.; Agius, P.; Westholm, J. O.; Chen, M.; Okamura, K.; Robine, N.; Leslie, C. S.; Lai, E. C.
    Genome Research (2011)

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  • Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
    Journal Article

    Betel, D.; Koppal, A.; Agius, P.; Sander, C.; Leslie, C.
    Genome Biology (2010)

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  • High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions
    Journal Article

    Agius, P.; Arvey, A.; Chang, W.; Noble, W. S.; Leslie, C.
    PLoS Computational Biology (2010)

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  • Comparing RNA secondary structures using a relaxed base-pair score
    Journal Article

    Agius, P.; Bennett, K. P.; Zuker, M.
    RNA (2010)

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