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John Damon Chodera

Formats
  1. Journal Article (74)
  2. Meeting Abstract (35)
  3. Review (7)
  4. Editorial (2)
  5. Correspondence (1)
  6. Guidelines (1)
  7. Research Letter (1)
Groups
  1. Center for Molecular Imaging and Biotechnology (CMIB) (121)
  2. Computational and Structural Biology Program Faculty (121)
  3. GSK Faculty (121)
  4. Sloan Kettering Institute Faculty (121)
  5. MSK Grad Students (65)
  6. Sloan Kettering Institute Postdocs (35)

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People
  1. Arien Rustenburg (14)
  2. Steven Albanese (12)
  3. Mehtap Isik (10)
  4. Rafal Wiewiora (10)
  5. Andrea Rizzi (9)
  6. Joshua Fass (9)

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Years
  1. 2025 (6)
  2. 2024 (9)
  3. 2023 (10)
  4. 2022 (11)
  5. 2021 (12)
  6. 2020 (7)

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Publications
  1. Biophysical Journal (21)
  2. Journal of Chemical Theory and Computation (14)
  3. Journal of Computer-Aided Molecular Design (13)
  4. Abstracts of Papers of the American Chemical Society (11)
  5. Journal of Chemical Information and Modeling (7)
  6. Journal of Physical Chemistry B (7)

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Publishers
  1. American Chemical Society (42)
  2. Cell Press (24)
  3. Springer (15)
  4. Nature Publishing Group (12)
  5. Royal Society of Chemistry (4)
  6. eLife Sciences Publications Ltd. (4)

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Results (121)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • A small-molecule pan-Id antagonist inhibits pathologic ocular neovascularization
    Journal Article

    Wojnarowicz, P. M.; Lima e Silva, R.; Ohnaka, M.; Lee, S. B.; Chin, Y.; Kulukian, A.; Chang, S. H.; Desai, B.; Garcia Escolano, M.; Shah, R.; more...
    Cell Reports (2019)

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  • Ancestral reconstruction reveals mechanisms of ERK regulatory evolution
    Journal Article

    Sang, D.; Pinglay, S.; Wiewiora, R. P.; Selvan, M. E.; Lou, H. J.; Chodera, J. D.; Turk, B. E.; Gümüş, Z. H.; Holt, L. J.
    eLife (2019)

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  • Is the Force with us? Automating generalizable torsions
    Meeting Abstract

    Stern, C.; Smith, D.; Bayly, C.; Chodera, J.
    Abstracts of Papers of the American Chemical Society (2019)

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  • Introducing the Open Force Field Initiative: Better force fields through open, data-driven science
    Meeting Abstract

    Shirts, M.; Mobley, D.; Chodera, J.; Gilson, M.; Wang, L. P.
    Abstracts of Papers of the American Chemical Society (2019)

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  • The dynamic conformational landscape of the protein methyltransferase SETD8
    Journal Article

    Chen, S.; Wiewiora, R. P.; Meng, F.; Babault, N.; Ma, A.; Yu, W.; Qian, K.; Hu, H.; Zou, H.; Wang, J.; more...
    eLife (2019)

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  • Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia
    Journal Article

    Minuesa, G.; Albanese, S. K.; Xie, W.; Kazansky, Y.; Worroll, D.; Chow, A.; Schurer, A.; Park, S. M.; Rotsides, C. Z.; Taggart, J.; more...
    Nature Communications (2019)

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  • Markov models of functional dynamics of histone lysine methyltransferases by millisecond-timescale molecular simulation and chemical probing
    Meeting Abstract

    Wiewiora, R. P.; Chen, S.; Luo, M.; Chodera, J. D.
    Biophysical Journal (2019)

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  • OpenPathSampling: A Python framework for path sampling simulations. 2. Building and customizing path ensembles and sample schemes
    Review

    Swenson, D. W. H.; Prinz, J. H.; Noe, F.; Chodera, J. D.; Bolhuis, P. G.
    Journal of Chemical Theory and Computation (2019)

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  • What makes a kinase promiscuous for inhibitors?
    Journal Article

    Hanson, S. M.; Georghiou, G.; Thakur, M. K.; Miller, W. T.; Rest, J. S.; Chodera, J. D.; Seeliger, M. A.
    Cell Chemical Biology (2019)

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  • Toward learned chemical perception of force field typing rules
    Journal Article

    Zanette, C.; Bannan, C. C.; Bayly, C. I.; Fass, J.; Gilson, M. K.; Shirts, M. R.; Chodera, J. D.; Mobley, D. L.
    Journal of Chemical Theory and Computation (2019)

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