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John Damon Chodera

Formats
  1. Journal Article (74)
  2. Meeting Abstract (35)
  3. Review (7)
  4. Editorial (2)
  5. Correspondence (1)
  6. Guidelines (1)
  7. Research Letter (1)
Groups
  1. Center for Molecular Imaging and Biotechnology (CMIB) (121)
  2. Computational and Structural Biology Program Faculty (121)
  3. GSK Faculty (121)
  4. Sloan Kettering Institute Faculty (121)
  5. MSK Grad Students (65)
  6. Sloan Kettering Institute Postdocs (35)

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People
  1. Arien Rustenburg (14)
  2. Steven Albanese (12)
  3. Mehtap Isik (10)
  4. Rafal Wiewiora (10)
  5. Andrea Rizzi (9)
  6. Joshua Fass (9)

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Years
  1. 2025 (6)
  2. 2024 (9)
  3. 2023 (10)
  4. 2022 (11)
  5. 2021 (12)
  6. 2020 (7)

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Publications
  1. Biophysical Journal (21)
  2. Journal of Chemical Theory and Computation (14)
  3. Journal of Computer-Aided Molecular Design (13)
  4. Abstracts of Papers of the American Chemical Society (11)
  5. Journal of Chemical Information and Modeling (7)
  6. Journal of Physical Chemistry B (7)

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Publishers
  1. American Chemical Society (42)
  2. Cell Press (24)
  3. Springer (15)
  4. Nature Publishing Group (12)
  5. Royal Society of Chemistry (4)
  6. eLife Sciences Publications Ltd. (4)

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Results (121)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • Exploring the drug binding ensemble using Hamiltonian replica exchange simulations
    Meeting Abstract

    Shirts, M. R.; Wang, K.; Chodera, J. D.
    Abstracts of Papers of the American Chemical Society (2014)

    Fulltext@MSK | Save
  • Systematic improvement on the classical molecular model of water
    Meeting Abstract

    Wang, L. P.; Head-Gordon, T.; Ponder, J.; Ren, P. Y.; Chodera, J.; Eastman, P.; Martinez, T. J.; Pande, V. S.
    Biophysical Journal (2014)

    Fulltext@MSK | Save
  • Numerical Langevin Simulations: Equilibrium Dynamics and Nonequilibrium Thermodynamics
    Meeting Abstract

    Sivak, D. A.; Chodera, J. D.; Crooks, G. E.
    Biophysical Journal (2014)

    Fulltext@MSK | Save
  • Toward a global view of the conformational landscape of the human kinome
    Meeting Abstract

    Parton, D. L.; Shukla, D.; Zhao, Y. T.; Pande, V. S.; Chodera, J. D.
    Biophysical Journal (2014)

    Fulltext@MSK | Save
  • Time step rescaling recovers continuous-time dynamical properties for discrete-time Langevin integration of nonequilibrium systems
    Journal Article

    Sivak, D. A.; Chodera, J. D.; Crooks, G. E.
    Journal of Physical Chemistry B (2014)

    Fulltext@MSK | Save
  • Spectral rate theory for two-state kinetics
    Journal Article

    Prinz, J. H.; Chodera, J. D.; Noé, F.
    Physical Review X (2014)

    Fulltext@MSK | Save
  • Markov state models of biomolecular conformational dynamics
    Journal Article

    Chodera, J. D.; Noé, F.
    Current Opinion in Structural Biology (2014)

    Fulltext@MSK | Save
  • Systematic improvement on the classical molecular model of water
    Meeting Abstract

    Wang, L. P.; Head-Gordon, T.; Ponder, J. W.; Ren, P. Y.; Chodera, J. D.; Eastman, P. K.; Martinez, T. J.; Pande, V. S.
    Abstracts of Papers of the American Chemical Society (2013)

    Fulltext@MSK | Save
  • Identifying ligand binding sites and poses using GPU-accelerated Hamiltonian replica exchange molecular dynamics
    Journal Article

    Wang, K.; Chodera, J. D.; Yang, Y.; Shirts, M. R.
    Journal of Computer-Aided Molecular Design (2013)

    Fulltext@MSK | Save
  • Systematic improvement of a classical molecular model of water
    Journal Article

    Wang, L. P.; Head-Gordon, T.; Ponder, J. W.; Ren, P.; Chodera, J. D.; Eastman, P. K.; Martinez, T. J.; Pande, V. S.
    Journal of Physical Chemistry B (2013)

    Fulltext@MSK | Save