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John Damon Chodera

Formats
  1. Journal Article (74)
  2. Meeting Abstract (35)
  3. Review (7)
  4. Editorial (2)
  5. Correspondence (1)
  6. Guidelines (1)
  7. Research Letter (1)
Groups
  1. Center for Molecular Imaging and Biotechnology (CMIB) (121)
  2. Computational and Structural Biology Program Faculty (121)
  3. GSK Faculty (121)
  4. Sloan Kettering Institute Faculty (121)
  5. MSK Grad Students (65)
  6. Sloan Kettering Institute Postdocs (35)

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People
  1. Arien Rustenburg (14)
  2. Steven Albanese (12)
  3. Mehtap Isik (10)
  4. Rafal Wiewiora (10)
  5. Andrea Rizzi (9)
  6. Joshua Fass (9)

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Years
  1. 2025 (6)
  2. 2024 (9)
  3. 2023 (10)
  4. 2022 (11)
  5. 2021 (12)
  6. 2020 (7)

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Publications
  1. Biophysical Journal (21)
  2. Journal of Chemical Theory and Computation (14)
  3. Journal of Computer-Aided Molecular Design (13)
  4. Abstracts of Papers of the American Chemical Society (11)
  5. Journal of Chemical Information and Modeling (7)
  6. Journal of Physical Chemistry B (7)

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Publishers
  1. American Chemical Society (42)
  2. Cell Press (24)
  3. Springer (15)
  4. Nature Publishing Group (12)
  5. Royal Society of Chemistry (4)
  6. eLife Sciences Publications Ltd. (4)

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Results (121)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • A simple method for automated equilibration detection in molecular simulations
    Journal Article

    Chodera, J. D.
    Journal of Chemical Theory and Computation (2016)

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  • Stereochemistry matters: L-2HG as a tumor response to hypoxia
    Meeting Abstract

    Thompson, C. B.; Intlekofer, A. M.; DeMatteo, R. G.; Venneti, S.; Finley, L. W. S.; Lu, C.; Rustenburg, A. S.; Grinaway, P. B.; Chodera, J. D.; Cross, J. R.; more...
    Cancer Research (2015)

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  • Modeling error in experimental assays using the bootstrap principle: Understanding discrepancies between assays using different dispensing technologies
    Journal Article

    Hanson, S. M.; Ekins, S.; Chodera, J. D.
    Journal of Computer-Aided Molecular Design (2015)

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  • Developing high-throughput fluorescence-based assays for measuring kinase inhibitor free energies of binding
    Meeting Abstract

    Hanson, S. M.; Prinz, J. H.; Behr, J. M.; Grinaway, P. B.; Rustenburg, A. S.; Beauchamp, K. A.; Parton, D. L.; Chodera, J. D.
    Biophysical Journal (2015)

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  • Benchmarking and optimizing atomistic forcefields with density measurements
    Meeting Abstract

    Beauchamp, K. A.; Behr, J. M.; Grinaway, P. B.; Rustenburg, A. S.; Chodera, J. D.
    Biophysical Journal (2015)

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  • Toward automated benchmarking of atomistic force fields: Neat liquid densities and static dielectric constants from the ThermoML data archive
    Journal Article

    Beauchamp, K. A.; Behr, J. M.; Rustenburg, A. S.; Bayly, C. I.; Kroenlein, K.; Chodera, J. D.
    Journal of Physical Chemistry B (2015)

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  • Introduction to the special issue: Data part 2: Experimental data
    Journal Article

    Kramer, C.; Chodera, J.; Stouch, T.
    Journal of Computer-Aided Molecular Design (2015)

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  • Hypoxia induces production of L-2-hydroxyglutarate
    Journal Article

    Intlekofer, A. M.; DeMatteo, R. G.; Venneti, S.; Finley, L. W. S.; Lu, C.; Judkins, A. R.; Rustenburg, A. S.; Grinaway, P. B.; Chodera, J. D.; Cross, J. R.; more...
    Cell Metabolism (2015)

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  • Uncertainty estimation
    Journal Article

    Noé, F.; Chodera, J. D.
    Advances in Experimental Medicine and Biology (2014)

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  • Estimation and validation of Markov models
    Journal Article

    Prinz, J. H.; Chodera, J. D.; Noé, F.
    Advances in Experimental Medicine and Biology (2014)

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