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John Damon Chodera

Formats
  1. Journal Article (74)
  2. Meeting Abstract (35)
  3. Review (7)
  4. Correspondence (1)
  5. Editorial (1)
  6. Guidelines (1)
  7. Research Letter (1)
Groups
  1. Center for Molecular Imaging and Biotechnology (CMIB) (120)
  2. Computational and Structural Biology Program Faculty (120)
  3. GSK Faculty (120)
  4. Sloan Kettering Institute Faculty (120)
  5. MSK Grad Students (65)
  6. Sloan Kettering Institute Postdocs (35)

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People
  1. Arien Rustenburg (14)
  2. Steven Albanese (12)
  3. Mehtap Isik (10)
  4. Rafal Wiewiora (10)
  5. Andrea Rizzi (9)
  6. Joshua Fass (9)

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Years
  1. 2025 (5)
  2. 2024 (9)
  3. 2023 (10)
  4. 2022 (11)
  5. 2021 (12)
  6. 2020 (7)

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Publications
  1. Biophysical Journal (21)
  2. Journal of Chemical Theory and Computation (14)
  3. Journal of Computer-Aided Molecular Design (13)
  4. Abstracts of Papers of the American Chemical Society (11)
  5. Journal of Chemical Information and Modeling (7)
  6. Journal of Physical Chemistry B (7)

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Publishers
  1. American Chemical Society (42)
  2. Cell Press (24)
  3. Springer (15)
  4. Nature Publishing Group (11)
  5. Royal Society of Chemistry (4)
  6. eLife Sciences Publications Ltd. (4)

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Results (120)


Citation style sort is year ascending, and then by author or title. Author ascending is default.
  • Approaches for calculating solvation free energies and enthalpies demonstrated with an update of the FreeSolv database
    Journal Article

    Duarte Ramos Matos, G.; Kyu, D. Y.; Loeffler, H. H.; Chodera, J. D.; Shirts, M. R.; Mobley, D. L.
    Journal of Chemical and Engineering Data (2017)

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  • L-2-hydroxyglutarate production arises from noncanonical enzyme function at acidic pH
    Journal Article

    Intlekofer, A. M.; Wang, B.; Liu, H.; Shah, H.; Carmona-Fontaine, C.; Rustenburg, A. S.; Salah, S.; Gunner, M. R.; Chodera, J. D.; Cross, J. R.; more...
    Nature Chemical Biology (2017)

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  • A water-mediated allosteric network governs activation of Aurora kinase A
    Journal Article

    Cyphers, S.; Ruff, E. F.; Behr, J. M.; Chodera, J. D.; Levinson, N. M.
    Nature Chemical Biology (2017)

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  • Measuring experimental cyclohexane-water distribution coefficients for the SAMPL5 challenge
    Journal Article

    Rustenburg, A. S.; Dancer, J.; Lin, B.; Feng, J. A.; Ortwine, D. F.; Mobley, D. L.; Chodera, J. D.
    Journal of Computer-Aided Molecular Design (2016)

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  • Mechanistically distinct cancer-associated mTOR activation clusters predict sensitivity to rapamycin
    Journal Article

    Xu, J.; Pham, C. G.; Albanese, S. K.; Dong, Y.; Oyama, T.; Lee, C. H.; Rodrik-Outmezguine, V.; Yao, Z.; Han, S.; Chen, D.; more...
    Journal of Clinical Investigation (2016)

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  • Ensembler: Enabling high-throughput molecular simulations at the superfamily scale
    Journal Article

    Parton, D. L.; Grinaway, P. B.; Hanson, S. M.; Beauchamp, K. A.; Chodera, J. D.
    PLoS Computational Biology (2016)

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  • Simulating mTOR hyperactivating mutations to understand functionally significant structural rearrangements
    Meeting Abstract

    Albanese, S.; Xu, J.; Hsieh, J.; Chodera, J. D.
    Biophysical Journal (2016)

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  • Bridging the gap between computation and experiments in GPCRs
    Meeting Abstract

    Stern, C. D.; Perez-Aguilar, J. M.; Blanchard, S. C.; Weinstein, H.; Chodera, J. D.
    Biophysical Journal (2016)

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  • Dissecting the contribution of kinase conformational reorganization energies to inhibitor selectivity
    Meeting Abstract

    Hanson, S. M.; Rodriguez, L.; Behr, J. M.; Rizzi, A.; Parton, D. L.; Beauchamp, K. A.; Fass, J. H.; Prinz, J. H.; Boyce, S. E.; Seeliger, M. A.; more...
    Biophysical Journal (2016)

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  • A simple method for automated equilibration detection in molecular simulations
    Journal Article

    Chodera, J. D.
    Journal of Chemical Theory and Computation (2016)

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