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  • Divergent mutational processes distinguish hypoxic and normoxic tumours
    Journal Article

    Bhandari, V.; Li, C. H.; Bristow, R. G.; Boutros, P. C.; & PCAWG Consortium
    Nature Communications (2020)

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  • High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
    Journal Article

    Zhang, Y.; Chen, F.; Fonseca, N. A.; He, Y.; Fujita, M.; Nakagawa, H.; Zhang, Z.; Brazma, A.; PCAWG Transcriptome Working Group; PCAWG Structural Variation Working Group; more...
    Nature Communications (2020)

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  • Genomic footprints of activated telomere maintenance mechanisms in cancer
    Journal Article

    Sieverling, L.; Hong, C.; Koser, S. D.; Ginsbach, P.; Kleinheinz, K.; Hutter, B.; Braun, D. M.; Cortés-Ciriano, I.; Xi, R.; Kabbe, R.; more...
    Nature Communications (2020)

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  • A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
    Journal Article

    Jiao, W.; Atwal, G.; Polak, P.; Karlic, R.; Cuppen, E.; Danyi, A.; de Ridder, J.; van Herpen, C.; Lolkema, M. P.; Steeghs, N.; more...
    Nature Communications (2020)

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  • Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
    Journal Article

    Bailey, M. H.; Meyerson, W. U.; Dursi, L. J.; Wang, L. B.; Dong, G.; Liang, W. W.; Weerasinghe, A.; Li, S.; Li, Y.; Kelso, S.; more...
    Nature Communications (2020)

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  • Integrative pathway enrichment analysis of multivariate omics data
    Journal Article

    Paczkowska, M.; Barenboim, J.; Sintupisut, N.; Fox, N. S.; Zhu, H.; Abd-Rabbo, D.; Mee, M. W.; Boutros, P. C.; PCAWG Drivers and Functional Interpretation Working Group; Reimand, J.; more...
    Nature Communications (2020)

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  • Combined burden and functional impact tests for cancer driver discovery using DriverPower
    Journal Article

    Shuai, S.; PCAWG Drivers and Functional Interpretation Working Group; Gallinger, S.; Stein, L.; & PCAWG Consortium
    Nature Communications (2020)

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  • Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
    Journal Article

    Rubanova, Y.; Shi, R.; Harrigan, C. F.; Li, R.; Wintersinger, J.; Sahin, N.; Deshwar, A.; PCAWG Evolution and Heterogeneity Working Group; Morris, Q.; & PCAWG Consortium
    Nature Communications (2020)

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  • Inferring structural variant cancer cell fraction
    Journal Article

    Cmero, M.; Yuan, K.; Ong, C. S.; Schröder, J.; PCAWG Evolution and Heterogeneity Working Group; Corcoran, N. M.; Papenfuss, T.; Hovens, C. M.; Markowetz, F.; Macintyre, G.; more...
    Nature Communications (2020)

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  • Pathway and network analysis of more than 2500 whole cancer genomes
    Journal Article

    Reyna, M. A.; Haan, D.; Paczkowska, M.; Verbeke, L. P. C.; Vazquez, M.; Kahraman, A.; Pulido-Tamayo, S.; Barenboim, J.; Wadi, L.; Dhingra, P.; more...
    Nature Communications (2020)

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